View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_high_25 (Length: 247)
Name: NF16930_high_25
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12267094 - 12266864
Alignment:
| Q |
1 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267094 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
12266995 |
T |
|
| Q |
101 |
tgatttctaatgtgcgtgaggctacacccatagtagagaatttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatgaatattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12266994 |
tgatttctaatgtgcgtgaggctacacccatagtagagaatttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgt |
12266895 |
T |
|
| Q |
201 |
tatgtccttgaagtttattgtgagtgaattg |
231 |
Q |
| |
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||||||||| ||||||||||||||||||||| |
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| T |
12266894 |
tatgtccttcaagtttattgtgagtgaattg |
12266864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12282820 - 12282590
Alignment:
| Q |
1 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12282820 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
12282721 |
T |
|
| Q |
101 |
tgatttctaatgtgcgtgaggctacacccatagtagagaatttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatgaatattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12282720 |
tgatttctaatgtgcgtgaggctacacccatagtagagaatttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgt |
12282621 |
T |
|
| Q |
201 |
tatgtccttgaagtttattgtgagtgaattg |
231 |
Q |
| |
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||||||||| ||||||||||||||||||||| |
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| T |
12282620 |
tatgtccttcaagtttattgtgagtgaattg |
12282590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 12287673 - 12287528
Alignment:
| Q |
1 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||| ||||||||||||| |
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| T |
12287673 |
ttatctttcactgtcttcgtcgtgtaacaattaagagactcacctcgaacaacaacatatgcatcctcaattacatgaatattttccccggatataaccg |
12287574 |
T |
|
| Q |
101 |
tgatttctaatgtgcgtgaggctacacccatagtagagaatttaat |
146 |
Q |
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| ||||||||||| |||||||||||||||| ||| |||||||||| |
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| T |
12287573 |
ttatttctaatgtatgtgaggctacacccatcgtatagaatttaat |
12287528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 12257003 - 12256891
Alignment:
| Q |
1 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
100 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |||||||||| |
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| T |
12257003 |
ttatctttcaccgtttttgttgtgtaacaattaagagactcacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccg |
12256904 |
T |
|
| Q |
101 |
tgatttctaatgt |
113 |
Q |
| |
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| ||||||||||| |
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|
| T |
12256903 |
taatttctaatgt |
12256891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 12264395 - 12264283
Alignment:
| Q |
1 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
100 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |||||||||| |
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| T |
12264395 |
ttatctttcaccgtttttgttgtgtaacaattaagagactcacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccg |
12264296 |
T |
|
| Q |
101 |
tgatttctaatgt |
113 |
Q |
| |
|
| ||||||||||| |
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|
| T |
12264295 |
taatttctaatgt |
12264283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 12271007 - 12270895
Alignment:
| Q |
1 |
ttatctttcagcgtcttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccg |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||| || |
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| T |
12271007 |
ttatctttcaccgttttcgttgtgtaacaattaagagactcacctcgaacaacaacgtatgcatcctctgttacatgaatattttctccagatataatcg |
12270908 |
T |
|
| Q |
101 |
tgatttctaatgt |
113 |
Q |
| |
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| ||||||||||| |
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|
| T |
12270907 |
taatttctaatgt |
12270895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 29197714 - 29197581
Alignment:
| Q |
16 |
ttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccgtgatttctaatgtgc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||| |||||| || ||||||||||||| |
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| T |
29197714 |
ttcgttgtgtaacaattaagagactcacctcgaacgacaacgtatgcatcctcagttatatgaatattttcaccggttataactgttatttctaatgtgc |
29197615 |
T |
|
| Q |
116 |
gtgaggctacacccatagtagagaatttaatgtt |
149 |
Q |
| |
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|||| |||| |||||||||||| ||||| ||||| |
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|
| T |
29197614 |
gtgaagctatacccatagtagaaaatttgatgtt |
29197581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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