View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_high_29 (Length: 237)
Name: NF16930_high_29
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 15536820 - 15536925
Alignment:
| Q |
116 |
caaacacaaatcagtttttaaacagaaagtgaatgtacgaaacacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattct |
215 |
Q |
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| T |
15536820 |
caaacacaaatcagtttttaaacagaaagtgaatgtacgaagcacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattct |
15536919 |
T |
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| Q |
216 |
tccaag |
221 |
Q |
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|||||| |
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| T |
15536920 |
tccaag |
15536925 |
T |
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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 15611188 - 15611277
Alignment:
| Q |
128 |
agtttttaaacagaaagtgaatgtacgaaacacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattcttc |
217 |
Q |
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| T |
15611188 |
agtttttgaacaaaaattgaatgtatgaaacacttaacttgtcgagctcctcccacatttcctttgccgtatggcaacttgaaattcttc |
15611277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 15628291 - 15628358
Alignment:
| Q |
149 |
tgtacgaaacacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattctt |
216 |
Q |
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| T |
15628291 |
tgtatgaaacacttaacctgtcaagctcctcccacatttccttggctgtctgacaacttgaaattctt |
15628358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 15648816 - 15648914
Alignment:
| Q |
117 |
aaacacaaatcagtttttaaacagaaagtgaatgtacgaaacacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattct |
215 |
Q |
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| T |
15648816 |
aaacacaaacaagattttcaacaaaaattgaatgtatgaaacacttaacttgtcaagctgctcccacattttcttggctgtctgacaacttgaaattct |
15648914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 15658099 - 15658165
Alignment:
| Q |
155 |
aaacacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattcttccaag |
221 |
Q |
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| T |
15658099 |
aaacacctaacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaag |
15658165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 15504217 - 15504276
Alignment:
| Q |
154 |
gaaacacttaacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaatt |
213 |
Q |
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| T |
15504217 |
gaaaaacttaacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaatt |
15504276 |
T |
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