View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_high_30 (Length: 220)
Name: NF16930_high_30
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_30 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 3280146 - 3280328
Alignment:
| Q |
19 |
atgaatttgatttgtaataataaaaagtataattatcaatacattgaatgtcttatatttacaaaaacttatatgattgggcaggaatgaatatcaatac |
118 |
Q |
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| T |
3280146 |
atgaatttgatttgtaataataaaaagtataattatcaatacattgaatgtcttatatttacaaaaacttatatgattgggcaggaatgaatatcaatac |
3280245 |
T |
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| Q |
119 |
aagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcat |
201 |
Q |
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| T |
3280246 |
aagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcat |
3280328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 28098094 - 28097958
Alignment:
| Q |
63 |
tgaatgtcttatatttacaaaaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaa |
162 |
Q |
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| T |
28098094 |
tgaatgtcatatatttactcaaacttatcttattggccaggaatggatatgaattcgagtttattcgggaaatagtcaaatatgtatccaacaaattgaa |
28097995 |
T |
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| Q |
163 |
tcgtgctcctttacatgttgtcgattacccggttggc |
199 |
Q |
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| T |
28097994 |
tcatgtccttttacatgttgttgattaccccgttggc |
28097958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 28140149 - 28140201
Alignment:
| Q |
146 |
gtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttgg |
198 |
Q |
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| T |
28140149 |
gtatcgaacaagataaatcgtactcctttacatgttgcggattacccggttgg |
28140201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 28227507 - 28227618
Alignment:
| Q |
87 |
ttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcga |
186 |
Q |
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| T |
28227507 |
ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccga |
28227606 |
T |
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| Q |
187 |
ttacccggttgg |
198 |
Q |
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| T |
28227607 |
ttaccctgttgg |
28227618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 28005 - 28116
Alignment:
| Q |
87 |
ttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcga |
186 |
Q |
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| T |
28005 |
ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccga |
28104 |
T |
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| Q |
187 |
ttacccggttgg |
198 |
Q |
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| T |
28105 |
ttaccctgttgg |
28116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 18699001 - 18698912
Alignment:
| Q |
109 |
atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttgg |
198 |
Q |
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| T |
18699001 |
atatgaatacaagtttattggagatatagtcaaatacgtctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttgg |
18698912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 5090533 - 5090469
Alignment:
| Q |
134 |
atagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttgg |
198 |
Q |
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||||||| | |||| ||||||||||| |||| ||||||||||||||| |||||||||||||| |
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| T |
5090533 |
atagtcacatatgtctccaacaagatcaatcacactcctttacatgttgctgattacccggttgg |
5090469 |
T |
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