View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16930_high_5 (Length: 393)
Name: NF16930_high_5
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 4 - 377
Target Start/End: Original strand, 38152352 - 38152722
Alignment:
| Q |
4 |
aaaatatcatctgatactatagtgtgccaattctaagagctgaaatttttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152352 |
aaaatatcatctgatactatagtgtgccaattctaagagctgaaatt---ataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgag |
38152448 |
T |
|
| Q |
104 |
tggtagatttgaatgtttaaagcatctgtgccacctttgtggggagtaggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152449 |
tggtagatttgaatgtttaaagcatctgtgccacctttgtggggagtaggttgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatc |
38152548 |
T |
|
| Q |
204 |
cactccaacagccacctcctccacttatgaagtaatagatcttgtcttcagtcagctgaaaaacgtcttgtctgccaccccttgatatgttcttaatgaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152549 |
cactccaacagccacctcctccacttatgaagtaatagatcttgtcttcagtcagctgaaaaacgtcttgtctgccaccccttgatatgttcttaatgaa |
38152648 |
T |
|
| Q |
304 |
tcctgtatcgatgcagttttcatagcttgtcttgttcacctccagcacatggtaaaggtacttttgatattctt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152649 |
tcctgtatcgatgcagttttcatagcttgtcttgttcacctccagcacatggtaaaggtacttttgatattctt |
38152722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 32 - 352
Target Start/End: Original strand, 38222049 - 38222366
Alignment:
| Q |
32 |
aattctaagagctgaaatttttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtggtagatttgaatgtttaaagcatctg |
131 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| ||||||| || ||| |||||||||| || ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
38222049 |
aattctaatagctgaaattattataccaagaagttggtgcacatgaagattaagatgagcacaacaagtgagtggtagatttgaatgtttgaagtcgctg |
38222148 |
T |
|
| Q |
132 |
tgccacctttgtggggagtaggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccactccaacagccacctcctccacttat |
231 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||| | | |||| ||||||||| ||||| |
|
|
| T |
38222149 |
a---acttttgtggggagtaggctgaggagctggtgcaacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttat |
38222245 |
T |
|
| Q |
232 |
gaagtaatagatcttgtcttcagtcagctgaaaaacgtcttgtctgccaccccttgatatgttcttaatgaatcctgtatcgatgcagttttcatagctt |
331 |
Q |
| |
|
|||||||| | ||||| | ||| ||| ||||||||| ||| || | |||| ||| ||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
38222246 |
gaagtaatgggtcttggcctcactcaactgaaaaacttctcttccgacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagctt |
38222345 |
T |
|
| Q |
332 |
gtcttgttcacctccagcaca |
352 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
38222346 |
gtcttgttcacctccaacaca |
38222366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 52 - 353
Target Start/End: Original strand, 38158731 - 38159026
Alignment:
| Q |
52 |
ttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtggtagatttgaatgtttaaagcatctgtgccacctttgtggggagta |
151 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||||| |||| ||| ||||| |||| ||||||| |||||| || |||||||||||||||| |
|
|
| T |
38158731 |
ttataccaagaggttggtgcacatcaagattaagatgag---cacagatgaatggtaaatttaaatgtttgaagcatttga---acctttgtggggagta |
38158824 |
T |
|
| Q |
152 |
ggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccactccaacagccacctcctccacttatgaagtaatagatcttgtctt |
251 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| ||||||| ||| | | |||| ||||||||| ||||||||||||||| ||||| | | |
|
|
| T |
38158825 |
ggctgaggagctggtgcaacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttatgaagtaataggtcttggcct |
38158924 |
T |
|
| Q |
252 |
cagtcagctgaaaaacgtcttgtctgccaccccttgatatgttcttaatgaatcctgtatcgatgcagttttcatagcttgtcttgttcacctccagcac |
351 |
Q |
| |
|
|||| ||| ||||||| ||| || || ||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38158925 |
cagttagcagaaaaacatctcttccaccgccccttgttatgttcttgatgaaccctgtatctatgcagttttcatagcttgtcttgttcacctccaacac |
38159024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 52 - 352
Target Start/End: Original strand, 38228434 - 38228731
Alignment:
| Q |
52 |
ttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtggtagatttgaatgtttaaagcatctgtgccacctttgtggggagta |
151 |
Q |
| |
|
||||||||||| ||||||| || ||| |||||||||| || |||||||||||||||||||||||||| ||| ||| || ||||||||||||| |
|
|
| T |
38228434 |
ttataccaagaagttggtgcacatgaagattaagatgagcacagcaagtgagtggtagatttgaatgtttgaagtcgctga---acttttgtggggagta |
38228530 |
T |
|
| Q |
152 |
ggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccactccaacagccacctcctccacttatgaagtaatagatcttgtctt |
251 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| ||||||| ||| | | |||| ||||||||| ||||||||||||| | ||||| | | |
|
|
| T |
38228531 |
ggctgaggagctggtgcaacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttatgaagtaatgggtcttggcct |
38228630 |
T |
|
| Q |
252 |
cagtcagctgaaaaacgtcttgtctgccaccccttgatatgttcttaatgaatcctgtatcgatgcagttttcatagcttgtcttgttcacctccagcac |
351 |
Q |
| |
|
|| ||| ||||||||| ||| || | |||| ||| ||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38228631 |
cactcaactgaaaaacttctcttccgacacctgttgttatgttcttgatgaatccactatctatgcagttttcatagcttgtcttgttcacctccaacac |
38228730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University