View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16930_high_7 (Length: 340)
Name: NF16930_high_7
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 47324292 - 47324613
Alignment:
| Q |
19 |
aaagctgagtgtaatttgttgcttaaaaatcctgattcggctataagtgattcaacacgtgcactttgtctctgtaatccaacaaatacacatgggaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47324292 |
aaagctgagtgtaatttgttgcttaaaaatcctgattcagctataagtgattcaacacgtgcactttgtctctctaatccaacaaatacacatgggaaaa |
47324391 |
T |
|
| Q |
119 |
gtctttggagaagatcacaagcttatgatatgaaaggaatggctaaagagagtcttatggattgtataatgtttatgaatggttttgttaagtcaaatga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47324392 |
gtctttggagaagatcacaagcttatgatatgaaaggaatggctaaagagagtcttatggattgtataatgtttatgaatggttttgttaagtcaaatga |
47324491 |
T |
|
| Q |
219 |
gaacaagcatgttaaggtttcatatcatgctgcgaagatgttctgcaaacaaatggatgccacgtggctatttggcaatgtttgttcaaagtcaaaggta |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47324492 |
gaacaaacatgttaaggtttcatatcatgctgcgaagatgttctgcaaacaaatggatgccacgtggctatttggcgatgtttgttcaaagtcaaaggta |
47324591 |
T |
|
| Q |
319 |
gtagacaatgttaatattccac |
340 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47324592 |
gtagacaatgttaatattccac |
47324613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University