View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_10 (Length: 326)
Name: NF16930_low_10
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 28 - 316
Target Start/End: Original strand, 12507099 - 12507387
Alignment:
| Q |
28 |
aaccatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgggtattt-atatagtataggtcgattatttttgaaaga |
126 |
Q |
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| T |
12507099 |
aaccatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgtgtattttatatagtataggtcgattatttttgaaaga |
12507198 |
T |
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| Q |
127 |
gcagaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactattaattaaagcatgccaactactaatgc |
226 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12507199 |
gcacaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactattaattaaagcatgccaactactaatgc |
12507298 |
T |
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| Q |
227 |
tgctagcccatattttcttctctcaaccattttgcattactgctatgttatcatcacctaatctccattatgatggtattttatcctttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
12507299 |
tgctagcccatattttcttctctcaaccattttgcattactgcgatattatcatcacctaatttccattatgatggta-tttatcctttg |
12507387 |
T |
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