View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_18 (Length: 303)
Name: NF16930_low_18
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 22528014 - 22528294
Alignment:
| Q |
16 |
attcttgcatttcattaaagtatatttcgtggcattaaaaatcactactcttattacaatactnnnnnnnctcagtttgcaattattggtgttagactag |
115 |
Q |
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| T |
22528014 |
attcttgcatttcattaaagtgtatttcgtggcattaaaaatcactactcttattacaatactaagaaaactcagtttgcaattattggtgttagactag |
22528113 |
T |
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| Q |
116 |
aaatattactggggacagttgaatgtatatcacatacgcaatgggaacgaaagggcgggaaatcacggcatacaggaacgccataaagtggaggtttaaa |
215 |
Q |
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| T |
22528114 |
aaatattattggggacagttgaatgtatataacatacgcactgggaaggaaagggcgggaaatcatggcatccaggaacgccgtaaagtggaggtttaaa |
22528213 |
T |
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| Q |
216 |
actatcacaacaatgcgaacatagtttattannnnnnnngcaatagggacaatttcgagttggtttgaatttcggtctctg |
296 |
Q |
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| T |
22528214 |
actatcacaacaatgcaaacatagtttattattttttttgcaatagggacaatttcgagttggtttgaatttcggtctctg |
22528294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 22602640 - 22602919
Alignment:
| Q |
16 |
attcttgcatttcattaaagtatatttcgtggcattaaaaatcactactcttatta---caatactnnnnnnnctcagtttgcaattattggtgttagac |
112 |
Q |
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| T |
22602640 |
attcttacattttattaaagtgtaattcgtggcattaaacatcactactcttttttgagcaatactaagaaaactcagattgcaattgttggtgttagac |
22602739 |
T |
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| Q |
113 |
tagaaatattactggggacagttgaatgtatatcacatacgcaatgggaacgaaagggcgggaaatcacggcatacaggaacgccataaagtggaggttt |
212 |
Q |
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| T |
22602740 |
tagaaatattattggggacagttgaatgtatataacatacgcactgggaaggaaagggcgggaaatcatggcatccaggaacgccgtaaagtggaggttt |
22602839 |
T |
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| Q |
213 |
aaaactatcacaacaatgcgaacatagtttattannnnnnnngcaatagggacaatttcgagttggtttgaatttcggtc |
292 |
Q |
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| T |
22602840 |
aaaactatcacaacaataagaacatagtttattattttttttgcaatagggacaatttcgagttggtttgaatttcggtc |
22602919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 22515025 - 22515163
Alignment:
| Q |
94 |
gcaattattggtgttagactagaaatattactggggacagttgaatgtatatcacatacgcaatgggaacgaaagggcgggaaatcacggcatacaggaa |
193 |
Q |
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| T |
22515025 |
gcaattgttggtgttagactagaaatattattggggacagttgaatgtatgtcacatacgcaatgggaacgaaagggcgggaaatcacggcatacaggaa |
22515124 |
T |
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| Q |
194 |
cgccataaagtggaggtttaaaactatcacaacaatgcg |
232 |
Q |
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| T |
22515125 |
cgccataaagtggaggtttaaaactatcacaacaatgcg |
22515163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 22495624 - 22495730
Alignment:
| Q |
86 |
ctcagtttgcaattattggtgttagactagaaatattactggggacagttgaatgtatatcacatacgcaatgggaacgaaagggcgggaaatcacggca |
185 |
Q |
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| T |
22495624 |
ctcagtttgcaattgttggtgttagactagaaatatttttggggacagttgaacgtatatcacatatgcaatgtggacgaaggggcgcgaaatcacggca |
22495723 |
T |
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| Q |
186 |
tacagga |
192 |
Q |
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| T |
22495724 |
tgcagga |
22495730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 22495529 - 22495590
Alignment:
| Q |
16 |
attcttgcatttcattaaagtatatttcgtggcattaaaaatcactactcttattacaatac |
77 |
Q |
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| T |
22495529 |
attcttgcatttcattaaagtgtatttcgtggtattaaacatcactactcttattataatac |
22495590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 22513865 - 22513920
Alignment:
| Q |
16 |
attcttgcatttcattaaagtatatttcgtggcattaaaaatcactactcttatta |
71 |
Q |
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|||| |||||||||||||||| || ||||||| |||||| |||||||||||||||| |
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| T |
22513865 |
attcctgcatttcattaaagtgtaattcgtgggattaaacatcactactcttatta |
22513920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 22515183 - 22515224
Alignment:
| Q |
255 |
gcaatagggacaatttcgagttggtttgaatttcggtctctg |
296 |
Q |
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| T |
22515183 |
gcaatagggacaattttgagttggtttgaatttcggtttctg |
22515224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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