View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_19 (Length: 287)
Name: NF16930_low_19
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 27214876 - 27215137
Alignment:
| Q |
12 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
27214876 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcact |
27214975 |
T |
|
| Q |
112 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
211 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27214976 |
tggagctctgaaggacacacaacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27215075 |
T |
|
| Q |
212 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttct |
273 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27215076 |
atccatccacattgctcacatcatagaaatcttgtcccccgtttgttgctacggttatttct |
27215137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 27432585 - 27432846
Alignment:
| Q |
12 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
27432585 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
27432684 |
T |
|
| Q |
112 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27432685 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27432784 |
T |
|
| Q |
212 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttct |
273 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27432785 |
atccatccacattgctcacatcatagaaatcttgtcccccgtttgttgctacggttatttct |
27432846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 27444025 - 27443764
Alignment:
| Q |
12 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
27444025 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcact |
27443926 |
T |
|
| Q |
112 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
211 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27443925 |
tggagctctgaaggacacacaacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27443826 |
T |
|
| Q |
212 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttct |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27443825 |
atccatccacattgctcacatcttagaaatcttgtcccccgtttgttgctacggttatttct |
27443764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 27220838 - 27221099
Alignment:
| Q |
12 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
111 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| || ||| |
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|
| T |
27220838 |
ttcttcagtattgaaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaggcaatcacactcccatcagtaccaataact |
27220937 |
T |
|
| Q |
112 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
27220938 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27221037 |
T |
|
| Q |
212 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttct |
273 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |
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|
| T |
27221038 |
atccgtccacattgctcacatcgtagaagtcttgtcccccgtctgttgctaccgttatttct |
27221099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 27207505 - 27207766
Alignment:
| Q |
12 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcact |
111 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||| ||| ||||| |
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|
| T |
27207505 |
ttcttcagtattgaaatctccacgacaacaatatttatcttcctttaaagccaaacaagcgctcttacaagcaaacacactcccatcagaaccaatcacc |
27207604 |
T |
|
| Q |
112 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttga |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||| ||||| ||||| |||| |
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|
| T |
27207605 |
tggagctctgaaggacacacaacattaatgttcctaggacaactagcggttttgcagtcaccactcccaccttgtggcattacggacatgggcacattga |
27207704 |
T |
|
| Q |
212 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttct |
273 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |
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|
| T |
27207705 |
acccatcaacattgctcacatcgtagaaatcttgtcccccgttggatgctattgttatttct |
27207766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 27409757 - 27409991
Alignment:
| Q |
14 |
cttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttg |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| ||| ||||||||| |||| | ||||| |
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|
| T |
27409757 |
cttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaaccttttacttg |
27409856 |
T |
|
| Q |
114 |
gagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttgaat |
213 |
Q |
| |
|
|| |||| || |||||| | || || || |||||||||| | || |||||| ||| ||||||||||||| |||||| | |||||||||||||| |
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|
| T |
27409857 |
aagttctgcgggacacacagcgttgatatttgctggacaactagcggctttgcaagggccattcccaccttgtggagttacaaaaattggcacgttgaac |
27409956 |
T |
|
| Q |
214 |
ccatccacattgctcacatcgtagaaatcttgtcc |
248 |
Q |
| |
|
|| || || |||||||||||||||||||||||||| |
|
|
| T |
27409957 |
ccgtcaacgttgctcacatcgtagaaatcttgtcc |
27409991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 27388817 - 27389035
Alignment:
| Q |
30 |
tccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcac |
129 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||| | ||||||| |||| | | ||| ||||| | || ||| |
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|
| T |
27388817 |
tccacgacaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaaccttttaattgaagctccgcgggacac |
27388916 |
T |
|
| Q |
130 |
acaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggtgttacagacattggcacgttgaatccatccacattgctca |
229 |
Q |
| |
|
||| || ||||| ||||||| || |||| |||||| || ||||| || |||||||| ||||| ||||||||||||||||| || || || ||||||| |
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|
| T |
27388917 |
acagagttgatgtttgctggacagctagaggatttgcaatcgccacttccgccttgtggagttacggacattggcacgttgaaaccgtcaacgttgctca |
27389016 |
T |
|
| Q |
230 |
catcgtagaaatcttgtcc |
248 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27389017 |
catcgtagaaatcttgtcc |
27389035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 20952530 - 20952617
Alignment:
| Q |
57 |
taaagccaaacaagcactcttacaagcaaccacattcccatcagtacctatcacttggagctctgaagggcacacaacattaatgttc |
144 |
Q |
| |
|
||||||||||||||| || |||||||| |||||| ||||||||| ||| |||||||||||||| |||| ||||||| |||||||||| |
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|
| T |
20952530 |
taaagccaaacaagcgcttttacaagccaccacactcccatcagaaccggtcacttggagctcttaaggacacacaatattaatgttc |
20952617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 27416296 - 27416234
Alignment:
| Q |
23 |
tgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaagcaa |
85 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| ||||||| ||||||||||||||||||| |
|
|
| T |
27416296 |
tgtaatctccacgacaacaatattgatatgtattaaaagccatgcaagcactcttacaagcaa |
27416234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 20952648 - 20952716
Alignment:
| Q |
184 |
tgtggtgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccg |
252 |
Q |
| |
|
||||| |||| ||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
20952648 |
tgtggcgttattgacattgacacattgaacctgtccacattgctcacatcatataaatcttgtcccccg |
20952716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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