View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_2 (Length: 556)
Name: NF16930_low_2
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 42395500 - 42395679
Alignment:
| Q |
16 |
aatattcttgaaaatgttccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagtttt |
115 |
Q |
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| T |
42395500 |
aatattcttgaaaatgttccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagtttt |
42395599 |
T |
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| Q |
116 |
actgcaatgaatttatatatacttgattaaacacaaaaatttaagatcctnnnnnnntattgattattagagaattgtta |
195 |
Q |
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| T |
42395600 |
actgcaatgaatttatatatacttgattaaacacaaaaatttaagatcctaaaaaaatattgattattagagaattgtta |
42395679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 196 - 382
Target Start/End: Original strand, 42395703 - 42395878
Alignment:
| Q |
196 |
atagatccaagtagaccaacgaacacataactaatctaacactaatgtgaggtaaatatttagagaggtgacttaccatgttcatgaatcctacatgcaa |
295 |
Q |
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| T |
42395703 |
atagatccaagtagaccaacgaacacataacta-----------atgtgaggtaaatatttagagaggtgacttaccatgttgatgaaccctacatgcaa |
42395791 |
T |
|
| Q |
296 |
aacttgtgtttttcctggttgttgctttcttgagctccattttagcagttgcagtagtttctttggctgcagttacaagaagaacca |
382 |
Q |
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| T |
42395792 |
aacttgtgtttttcctggttgttgctttcttgtgctccattttagcagttgcagtagtttctttggctgcagttaaaagaagaacca |
42395878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 424 - 543
Target Start/End: Original strand, 42395880 - 42395999
Alignment:
| Q |
424 |
attaattgaaggctgtgtatgagaagaagagtatatgttattacccgtagaagaattcatcagtggatggaaatttcttatttctggaatctgatttatg |
523 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42395880 |
attaattgaaggttgtgtatgagaagaagagtatatgttattacccgtagaagaattcatcagtggaaggaaatttcttatttctggaatctgatttatg |
42395979 |
T |
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| Q |
524 |
aatttgtatatgaatatatt |
543 |
Q |
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|||||||||||||||||||| |
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| T |
42395980 |
aatttgtatatgaatatatt |
42395999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 29296023 - 29295916
Alignment:
| Q |
16 |
aatattcttgaaaatgttccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggacctagtttt |
115 |
Q |
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||||| |||||||||||| ||||| ||||||||||| || || | ||||| ||||| ||||||||||||| |||||| || | ||||||||||| ||| |
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| T |
29296023 |
aatatgcttgaaaatgttacctcttccaccttcttgaataattttggcacctaaacttaacttacccttcaaagtctcagaaaatttaggacctaatttc |
29295924 |
T |
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| Q |
116 |
actgcaat |
123 |
Q |
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|||||||| |
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| T |
29295923 |
actgcaat |
29295916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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