View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16930_low_24 (Length: 259)

Name: NF16930_low_24
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16930_low_24
NF16930_low_24
[»] chr6 (4 HSPs)
chr6 (22-233)||(29977318-29977529)
chr6 (19-233)||(19349568-19349781)
chr6 (19-121)||(7014673-7014775)
chr6 (131-244)||(31706506-31706619)
[»] chr5 (1 HSPs)
chr5 (22-245)||(26904411-26904633)
[»] chr8 (2 HSPs)
chr8 (19-233)||(35183052-35183266)
chr8 (19-125)||(36698836-36698942)
[»] chr7 (1 HSPs)
chr7 (20-239)||(27219417-27219636)
[»] scaffold0027 (1 HSPs)
scaffold0027 (19-209)||(139261-139451)
[»] chr3 (4 HSPs)
chr3 (19-233)||(19874875-19875089)
chr3 (19-161)||(15275514-15275656)
chr3 (158-247)||(15279327-15279416)
chr3 (196-239)||(21400183-21400226)
[»] chr1 (2 HSPs)
chr1 (19-244)||(28357514-28357739)
chr1 (197-244)||(40563849-40563896)
[»] chr4 (1 HSPs)
chr4 (55-220)||(24975783-24975948)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 29977529 - 29977318
Alignment:
Q  22 tgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtattat 121  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| | | ||||||    
T  29977529 tgagaaccatacacaaacatagtattatgggcctttagccaccataaagaatgatattttaccttttctaataggttctcaatagatgtctctatattat 29977430  T
Q  122 taaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaataata 221  Q
    |||||||| |||||||  ||||| ||||||  |||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  29977429 taaataacatgttatttcgttccgtccacaagagccaaacgcagagcagccaaatcaattgaagaaacgaccttcgagcctttgaataacctgaataatg 29977330  T
Q  222 aataaactgata 233  Q
    ||||||||||||    
T  29977329 aataaactgata 29977318  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 19349568 - 19349781
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||| | |||| |||| | | |||    
T  19349568 ttatgagaaccatacacaaacgtagtattatgggcctttagccaccataaagaatgatattttaccttttctaataggttcttaata-atgtctctatat 19349666  T
Q  119 tattaaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaata 218  Q
    |||||||||||||||||||  ||||| ||||||  |||||||| || ||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  19349667 tattaaataacctgttatttcgttccgtccacaagagccaaacgcagagcaggcaaatcaattgaagaaacgaccttcgagcctttgaataacctgaata 19349766  T
Q  219 ataaataaactgata 233  Q
    || ||||||||||||    
T  19349767 atgaataaactgata 19349781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 7014673 - 7014775
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  7014673 ttatgagagccatacacaaacataatattatgagcctttagccaccataaaaaatgatattttaccttttctaataagtaatcaatagatgtttctgtat 7014772  T
Q  119 tat 121  Q
    |||    
T  7014773 tat 7014775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 31706506 - 31706619
Alignment:
Q  131 tgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaataataaataaactg 230  Q
    ||||||| |||||  |||| || |||||||||||||| | |||||| ||||| | |||| |||  || |||||||||| |||||  |||| |||||| ||    
T  31706506 tgttattgtgttcactccatagcagccaaacacaaagaagccaaattaattggaaaaacgaccgacgcgcctttgaatgacctgtgtaatgaataaattg 31706605  T
Q  231 ataaaaatggtcac 244  Q
    | | ||||||||||    
T  31706606 aaagaaatggtcac 31706619  T

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Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 26904633 - 26904411
Alignment:
Q  22 tgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtattat 121  Q
    |||||||||||||||||||| || ||||| | ||||||||| |||||||||||||||||||||||||||||||  | |||||||||||||| ||| ||||    
T  26904633 tgagaaccatacacaaacatggtgttatgagcctttagccaacataaagaatgatattttgccttttctaatagctgatcaatagatgtttctgtgttat 26904534  T
Q  122 taaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaataata 221  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| || ||| |||  |||||||||||||||||||||||||     
T  26904533 taaataacctgttattatgttccgtccacagaagccaaac-caaagcagccaaatcaattggaggaacgaccgacgagcctttgaataacctgaataatg 26904435  T
Q  222 aataaactgataaaaatggtcacc 245  Q
    ||| || |||||||||||||||||    
T  26904434 aatgaattgataaaaatggtcacc 26904411  T

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Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 35183266 - 35183052
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||| ||||||  ||| | | |||    
T  35183266 ttatgagaatcatacacaaacatagtattatgagcctttagccaccataaagaatgatattttaccttttctaataggttctcaataagtgtctctatat 35183167  T
Q  119 tattaaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaata 218  Q
    |||||||||||||||||||| ||||| ||||||  |||||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  35183166 tattaaataacctgttattacgttccgtccacaagagccaaacgcaaagcagccaaattaattgaagaaacgaccttcgagcctttgaataacctgaata 35183067  T
Q  219 ataaataaactgata 233  Q
    || ||||||||||||    
T  35183066 atgaataaactgata 35183052  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 36698942 - 36698836
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    ||||||||  |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  36698942 ttatgagagtcatacacaaacatagtattatgagcctttagccaccataaagaatgatattttgtcttttctaataagttatcaatagacgtttctgtat 36698843  T
Q  119 tattaaa 125  Q
    |||||||    
T  36698842 tattaaa 36698836  T

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Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 27219636 - 27219417
Alignment:
Q  20 tatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtatt 119  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||| | | |||     
T  27219636 tatgagaaccatacacaaacatagtattatgggcctttagccaccataaggaatgatattttaccttttctaataggttctcaatagatgtctctatatg 27219537  T
Q  120 attaaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaataa 219  Q
    |||||||||||| |||||  ||||| |||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  27219536 attaaataacctattatttcgttccgtccacaaaagccaaacgcaaagcaaccaaatcaattgaagaaacgactttcgagcctttgaataaccagaataa 27219437  T
Q  220 taaataaactgataaaaatg 239  Q
    | |||||| ||||| |||||    
T  27219436 tgaataaattgatagaaatg 27219417  T

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Target: scaffold0027 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 139451 - 139261
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    |||||||| ||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||    
T  139451 ttatgagagccatatacaaacatagtattatgagcctttagtcaccataaagaatgatattttgccttttctaataagttatcaatagacatttatgtat 139352  T
Q  119 tattaaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaata 209  Q
    ||||||||||| |||| ||| ||||| |||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  139351 tattaaataacttgttgttacgttccgtccacagaagccaaatgcaaagaaaccaaatcaattgaagaaacgaccttcgagcctttgaata 139261  T

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Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 19874875 - 19875089
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||| | | |||    
T  19874875 ttatgagaaccatacacaaacatagtattatgagcctttagccaccataaagaatgatattttaccttttctaataggttctcaataggtgtctctatat 19874974  T
Q  119 tattaaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaata 218  Q
    |||||||||||||||||||   |||| ||||||  || ||||| || |||| |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19874975 tattaaataacctgttatttcattccgtccacaagaggcaaacgcagagcagccaaatcaatcgaagaaacgaccttcgagcctttgaataacctgaata 19875074  T
Q  219 ataaataaactgata 233  Q
    || ||||||||||||    
T  19875075 atgaataaactgata 19875089  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 15275514 - 15275656
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15275514 ttatgagaaccatacacaaacatagtattatgagtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttctgtat 15275613  T
Q  119 tattaaataacctgttattatgttccatccacagaagccaaac 161  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||    
T  15275614 tattaaataacttgttattacgttccgtccacagaagccaaac 15275656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 15279327 - 15279416
Alignment:
Q  158 aaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaataataaataaactgataaaaatggtcaccta 247  Q
    |||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  15279327 aaacgcaaagcagccaaatcaattgaagaaacgacctttgagcctttgaataacctgaataatgaataaattgataaaaatggtcgccta 15279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 21400183 - 21400226
Alignment:
Q  196 cgagcctttgaataacctgaataataaataaactgataaaaatg 239  Q
    |||||||||||||||||||||||||  ||||| |||||||||||    
T  21400183 cgagcctttgaataacctgaataatggataaattgataaaaatg 21400226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 28357514 - 28357739
Alignment:
Q  19 ttatgagaaccatacacaaacatagtattatgcgtctttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtat 118  Q
    ||||||||||  |||||||| || || ||||| |  ||||||||||||||||||||| ||| |||||||||||| |  | ||||| || ||||| | ||     
T  28357514 ttatgagaactgtacacaaaaatggtgttatgagcttttagccaccataaagaatgaaattgtgccttttctaagagctgatcaacaggtgtttctataa 28357613  T
Q  119 tattaaataacctgttattatgttccatccacagaagccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctg-aat 217  Q
    ||||||||||| ||||||| |||||| |||||| ||||||||| ||||||| |||||||||||| || ||| ||  |||||||||||| ||||||| |||    
T  28357614 tattaaataacatgttatt-tgttccgtccacacaagccaaacgcaaagcagccaaatcaattggaggaacgacagtcgagcctttgagtaacctgaaat 28357712  T
Q  218 aataaataaactgataaaaatggtcac 244  Q
    ||| |||||| ||||| ||||||||||    
T  28357713 aatgaataaattgatagaaatggtcac 28357739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 40563896 - 40563849
Alignment:
Q  197 gagcctttgaataacctgaataataaataaactgataaaaatggtcac 244  Q
    ||||||||||||||||||||||||  ||||| ||||||||||| ||||    
T  40563896 gagcctttgaataacctgaataatggataaattgataaaaatgatcac 40563849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 220
Target Start/End: Complemental strand, 24975948 - 24975783
Alignment:
Q  55 tttagccaccataaagaatgatattttgccttttctaataagttatcaatagatgtttttgtattattaaataacctgttattatgttccatccacagaa 154  Q
    |||| ||||||||| || ||| |||||||||||||||| |  | |||||||| |||||   | |||||||||||| |||||||| ||||   |||||  |    
T  24975948 tttaaccaccataaggagtgaaattttgccttttctaaaagctgatcaataggtgtttcgatgttattaaataacttgttattacgttcatgccacacga 24975849  T
Q  155 gccaaacacaaagcaaccaaatcaattgaagaaacaaccttcgagcctttgaataacctgaataat 220  Q
    |||| ||||||||||  |||||||||||||||||| ||| |||||| ||||| |||||| ||||||    
T  24975848 gccacacacaaagcagtcaaatcaattgaagaaacgaccgtcgagcatttgagtaacctaaataat 24975783  T

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