View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_28 (Length: 249)
Name: NF16930_low_28
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12282829 - 12283067
Alignment:
| Q |
1 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12282829 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
12282928 |
T |
|
| Q |
101 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
12282929 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcggattttctcaatggcgccgtgccggaaaattgttcgcaaattttgagttataaa |
12283028 |
T |
|
| Q |
201 |
ttgagggattgggaagggaggcaaaatggagttattcat |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
12283029 |
ttgagggattgggaagggaggcaaaatggagttattcat |
12283067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12267103 - 12267341
Alignment:
| Q |
1 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267103 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
12267202 |
T |
|
| Q |
101 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
12267203 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcggattttcttaatggcaccgtgccggaaaattgttcgcaaattttgagttataaa |
12267302 |
T |
|
| Q |
201 |
ttgagggattgggaagggaggcaaaatggagttattcat |
239 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
12267303 |
ttgagggattgggaagggaggcaaaatggggttattcat |
12267341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12257009 - 12257247
Alignment:
| Q |
1 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
100 |
Q |
| |
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||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
12257009 |
attgtgggaaaaactcgagttttctttcatggaatgagaagtttttgttgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaa |
12257108 |
T |
|
| Q |
101 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaa |
200 |
Q |
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|||||||||||| |||||||||||||| |||||||||| |||| |||||||||||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
12257109 |
gtttaaaagtgtacgtcctattggggtggcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaa |
12257208 |
T |
|
| Q |
201 |
ttgagggattgggaagggaggcaaaatggagttattcat |
239 |
Q |
| |
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|||||| | |||||||||||||||||||||||||||||| |
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| T |
12257209 |
ttgaggaactgggaagggaggcaaaatggagttattcat |
12257247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12264401 - 12264639
Alignment:
| Q |
1 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
100 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
12264401 |
attgtgggaaaaactcgagttttctttcatggaatgagaagtttttgttgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaa |
12264500 |
T |
|
| Q |
101 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaa |
200 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||| |||| |||||||||||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
12264501 |
gtttaaaagtgtacgtcctattggggtggcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaa |
12264600 |
T |
|
| Q |
201 |
ttgagggattgggaagggaggcaaaatggagttattcat |
239 |
Q |
| |
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|||||| | |||||||||||||||||||||||||||||| |
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| T |
12264601 |
ttgaggaactgggaagggaggcaaaatggagttattcat |
12264639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12271013 - 12271251
Alignment:
| Q |
1 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
100 |
Q |
| |
|
||||||| ||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12271013 |
attgtgggaaaaactcaagttttctttcatggaatgagaagtttttgttgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaa |
12271112 |
T |
|
| Q |
101 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaa |
200 |
Q |
| |
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||| ||||||||||| ||||||||||| |||||||| | |||||| ||| |||| || || | || ||||||||||||| | |||||||||||||||| |
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| T |
12271113 |
gttcaaaagtgttcgccctattggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaa |
12271212 |
T |
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| Q |
201 |
ttgagggattgggaagggaggcaaaatggagttattcat |
239 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
12271213 |
ttgaggaattgggaagggaggcaaaatggagttattcat |
12271251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 12287687 - 12287917
Alignment:
| Q |
9 |
aaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaa |
108 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12287687 |
aaaaactcgagttttctttcatggaatgagaagtttttattaaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaa |
12287786 |
T |
|
| Q |
109 |
gtgttcgtcctattggggtagcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgaggga |
208 |
Q |
| |
|
||||||| ||||||||||| |||||||| | |||||| ||| |||| || || |||| ||||||||||||| | ||||||||||||||||||||| || |
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|
| T |
12287787 |
gtgttcgacctattggggtggcaagaatcgccgtttcggatattctaaacggggctgaatcggaaaattgttcacgaattttgagttataaattgagaga |
12287886 |
T |
|
| Q |
209 |
ttgggaagggaggcaaaatggagttattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
12287887 |
ttgggaagggaggcaaaatggagttattcat |
12287917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 29197735 - 29197973
Alignment:
| Q |
1 |
attgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaa |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
29197735 |
attgtggaaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaa |
29197834 |
T |
|
| Q |
101 |
gtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaa |
200 |
Q |
| |
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||| ||||||||||| ||||||||||| || |||| | ||||| ||| |||| || || |||| |||||||||||| | ||||||||||||||| |
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| T |
29197835 |
gttcaaaagtgttcgccctattggggtgacacgaatcgccgttttggatattctaaacggggctgaattggaaaattgttcccggattttgagttataaa |
29197934 |
T |
|
| Q |
201 |
ttgagggattgggaagggaggcaaaatggagttattcat |
239 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| |
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|
| T |
29197935 |
ttgaggaactgggaagggaggcaaaatggagttattcat |
29197973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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