View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_36 (Length: 237)
Name: NF16930_low_36
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39189280 - 39189060
Alignment:
| Q |
1 |
tgtctcctggggatcgtaccgtatctttcctaattggccaattcagcttgctttggattgaacaacaaaaacgcctcaactttaaggttgatgttgtaga |
100 |
Q |
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| T |
39189280 |
tgtctcctggggatcgtaccgtatcttttctaattggccaattcagcttgctttggattgaacaacaaaaacggctcaactttaaagttgatgttgtaga |
39189181 |
T |
|
| Q |
101 |
aagtgaatggggacagggtgccgatcttgatgcactagaatcaaaacttgctttggataaaacacataccataaaggcaatttgtattgttcacaatgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39189180 |
aagtgaatggggacagggtgccgatcttgatgcactagaatcaaaacttgcttcggataaaacacataccataaaggcaatttgtattgttcacaatgag |
39189081 |
T |
|
| Q |
201 |
acaacaacaggggtcacaaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39189080 |
acaacaacaggggtcacaaat |
39189060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41260869 - 41261093
Alignment:
| Q |
1 |
tgtctcctggggatcgtaccgtatctttcctaattggccaattcagcttgctttggattgaacaacaaaaacgcctcaactttaaggttgatgttgtaga |
100 |
Q |
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||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41260869 |
tgtctcctgggtatcgtactatatcttttctaattggccaattcagtttgctttggattgaacaacaaaaacgcctcaactttaaggttgatgttgtaga |
41260968 |
T |
|
| Q |
101 |
aagtgaatggggacagggtgccgatcttgatgcactagaatcaaaacttgctttggataaaaca-----cataccataaaggcaatttgtattgttcaca |
195 |
Q |
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| T |
41260969 |
aagtgaatggggacagggtgccaatcttgaagctctagaat-taaacttgcttcggataaaacacatatcataccataaaggcaatttgtattgttcaca |
41261067 |
T |
|
| Q |
196 |
atgagacaacaacaggggtcacaaat |
221 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41261068 |
atgagacaacaacaggggtcacaaat |
41261093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28460236 - 28460030
Alignment:
| Q |
1 |
tgtctcctggggatcgtaccgtatctttcctaattggccaattcagcttgctttggattgaacaacaaaaacgcctcaactttaaggttgatgttgtaga |
100 |
Q |
| |
|
|||||| ||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
28460236 |
tgtctcttggggatcgtagtgtattttt--taattggccaattcagtttgctttggattgaacaacaaaaatgcctcaactttaagattgatgttgtaga |
28460139 |
T |
|
| Q |
101 |
aagtgaatggggacagggtgccgatcttgatgcactagaatcaaaacttgctttggataaaacacataccataaaggcaatttgtattgttcacaatgag |
200 |
Q |
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|||||||||||| || |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
28460138 |
aagtgaatggggtcaaggtgtcgatcttgatgctctagaatcaaaacttgcttcagataaaacacataccataaaagcaatttgtattgttcataatgag |
28460039 |
T |
|
| Q |
201 |
acaacaaca |
209 |
Q |
| |
|
||||||||| |
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| T |
28460038 |
acaacaaca |
28460030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 16790924 - 16791125
Alignment:
| Q |
1 |
tgtctcctggggatcgtaccgtatctttcctaattggccaattcagcttgctttggattgaacaacaaaaacgcctcaactttaaggttgatgttgtaga |
100 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| | |||||||||||||| ||||||||| |||| || || ||||||| || ||||| || |||||||| || |
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| T |
16790924 |
tgtcacctggagatcgtattgtatctttcgtgattggccaattcagtttgctttgggttgatcagcagcaacgccttaaatttaatgtcgatgttgtgga |
16791023 |
T |
|
| Q |
101 |
aagtgaatggggacagggtgccgatcttgatgcactagaatcaaaacttgctttggataaaacacataccataaaggcaatttgtattgttcacaatgag |
200 |
Q |
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|||||||||||| | ||||| ||||| || ||||||||||||||||||| ||| |||| || |||||||| ||||| |||||||| |||||| |
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| T |
16791024 |
aagtgaatggggccgtggtgctgatctcgacattctagaatcaaaacttgcttctgattctgcacacactataaaggctatttgcattgttcataatgag |
16791123 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
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|| |
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|
| T |
16791124 |
ac |
16791125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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