View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_4 (Length: 403)
Name: NF16930_low_4
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 151 - 389
Target Start/End: Complemental strand, 2458157 - 2457919
Alignment:
| Q |
151 |
atgatgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacat |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458157 |
atgatgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacat |
2458058 |
T |
|
| Q |
251 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcat |
2457958 |
T |
|
| Q |
351 |
tcacccacaacctcactgcatctgtgccactcaagtctc |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2457957 |
tcacccacaacctcactgcatctgtgccactcaagtctc |
2457919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 164 - 383
Target Start/End: Original strand, 3063274 - 3063496
Alignment:
| Q |
164 |
tatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgct |
260 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
|
| Q |
261 |
ttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaa |
360 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
3063374 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaa |
3063473 |
T |
|
| Q |
361 |
cctcactgcatctgtgccactca |
383 |
Q |
| |
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| |||||||||||| |||||||| |
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| T |
3063474 |
cttcactgcatctgagccactca |
3063496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 157 - 383
Target Start/End: Complemental strand, 2462730 - 2462501
Alignment:
| Q |
157 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatcca |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
2462730 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2462631 |
T |
|
| Q |
254 |
atacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattca |
353 |
Q |
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|
| ||| | || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
2462630 |
acacgttgtgagtttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
2462531 |
T |
|
| Q |
354 |
cccacaacctcactgcatctgtgccactca |
383 |
Q |
| |
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|||||||| |||||||||||| |||||||| |
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| T |
2462530 |
cccacaacttcactgcatctgagccactca |
2462501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 157 - 389
Target Start/End: Complemental strand, 2466775 - 2466543
Alignment:
| Q |
157 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatcca |
253 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
2466775 |
cacttagtatggcttttcaccaa---agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2466679 |
T |
|
| Q |
254 |
atacgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattca |
353 |
Q |
| |
|
| ||| | || |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
2466678 |
acacgttgtgagtttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattca |
2466579 |
T |
|
| Q |
354 |
cccacaacctcactgcatctgtgccactcaagtctc |
389 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||| |
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|
| T |
2466578 |
cccacaacttcactgcatctgagccacttaagtctc |
2466543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 157 - 383
Target Start/End: Complemental strand, 2470100 - 2469874
Alignment:
| Q |
157 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaata |
256 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||| |
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| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcacatccaatc |
2470001 |
T |
|
| Q |
257 |
cgctttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcaccc |
356 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||| |||||||||| || |||| |||||||| |||||| |||| | ||||| | ||| |||| ||||| |
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| T |
2470000 |
cgttgtgtgtttctccaaaccacctgagtgtagtggccacacatttcaccattagcacatgaattactactataatcatagtagggtttttcatccaccc |
2469901 |
T |
|
| Q |
357 |
acaacctcactgcatctgtgccactca |
383 |
Q |
| |
|
||||| |||| || ||| |||||||| |
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| T |
2469900 |
acaacttcaccgcttctacgccactca |
2469874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 2458287 - 2458214
Alignment:
| Q |
19 |
gttttattatatataacaatttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctgg |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458287 |
gttttattatatataacaatttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctgg |
2458214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 2474352 - 2474236
Alignment:
| Q |
176 |
ccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaa |
275 |
Q |
| |
|
|||| ||||||||| || || |||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||||| |||||||||||||||| |
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|
| T |
2474352 |
ccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaa |
2474253 |
T |
|
| Q |
276 |
caacctgagtgtaatgg |
292 |
Q |
| |
|
| |||||||| |||||| |
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|
| T |
2474252 |
ccacctgagtataatgg |
2474236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 2471090 - 2471027
Alignment:
| Q |
191 |
ggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaa |
254 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||| |
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|
| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaa |
2471027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 164 - 383
Target Start/End: Complemental strand, 18016046 - 18015824
Alignment:
| Q |
164 |
tatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatccaatacgct |
260 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||| ||| | |
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|
| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
|
| Q |
261 |
ttgtgtttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaa |
360 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
18015946 |
gtgagtttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaa |
18015847 |
T |
|
| Q |
361 |
cctcactgcatctgtgccactca |
383 |
Q |
| |
|
| |||||||||||| |||||||| |
|
|
| T |
18015846 |
cttcactgcatctgagccactca |
18015824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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