View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_low_40 (Length: 215)
Name: NF16930_low_40
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 44185719 - 44185532
Alignment:
| Q |
15 |
cagagaaacaaagcaagtcattaataccagaatccaaca---tatcaatataaatatcatcctgttgaaatgaaactggccatttcaaataaattcctca |
111 |
Q |
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| T |
44185719 |
cagagaaacaaagcaagtcattaataccagaatccaacaacatatcaatataaatatcatcctgttgaaatgaaactggccatttcaaataaattcctca |
44185620 |
T |
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| Q |
112 |
gcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatg |
199 |
Q |
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| T |
44185619 |
gcagagagcaaatacagattggaaccgtctcgaggatgtggcgatatctccttaatatttaggaagagataggtgtgattgtacaatg |
44185532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 4876300 - 4876101
Alignment:
| Q |
16 |
agagaaacaaagcaagtcattaataccagaatccaacatatcaatataaat---atcatcctgttgaaatgaaactggccatttcaaat----------- |
101 |
Q |
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| T |
4876300 |
agagaaacaaagcacgtcgttaataccggaatccaacatatcaatataaatctcatcatcatgttgaaatgaaactggccatttcaatttaaccatattc |
4876201 |
T |
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| Q |
102 |
--aaattcctcagcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatg |
199 |
Q |
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| T |
4876200 |
tcaaattcctcagcagagagcaaatacagattggaaccgtctcgtggatgtggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatg |
4876101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 1326712 - 1326620
Alignment:
| Q |
15 |
cagagaaacaaagcaagtcattaataccagaatccaacatatcaatataaatat------catcctgttgaaatgaaactggccatttcaaat |
101 |
Q |
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| T |
1326712 |
cagataaacaaagaacgtcgttaataccagaatccaacatattagtataactataaacctcatcctgttgaaatgaaactggccatttcaaat |
1326620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 5387894 - 5387693
Alignment:
| Q |
15 |
cagagaaacaaagcaagtcattaataccagaatccaacatatcaatataaatatcatcctgttgaaat--gaaactggccatttcaaat----------- |
101 |
Q |
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| T |
5387894 |
cagagaaacaaagcacatcattaataccagaatccaacatatcagtttatacctcatcctgttgaaatttgaaactggccatttcaaattgacaatacct |
5387795 |
T |
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| Q |
102 |
----aaattcctcagcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaa |
197 |
Q |
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| T |
5387794 |
ccttaaattcctcagcagagagcaaatacagattggaaccatcttgaggatgtggcaatatctcctttatatataggatgagaaaggtgtgatcatacaa |
5387695 |
T |
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| Q |
198 |
tg |
199 |
Q |
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|| |
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| T |
5387694 |
tg |
5387693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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