View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16930_low_41 (Length: 212)

Name: NF16930_low_41
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16930_low_41
NF16930_low_41
[»] chr5 (3 HSPs)
chr5 (19-194)||(31158005-31158180)
chr5 (53-142)||(31198092-31198181)
chr5 (55-142)||(41352693-41352780)
[»] chr3 (1 HSPs)
chr3 (53-141)||(25791651-25791739)
[»] chr6 (1 HSPs)
chr6 (53-141)||(2325656-2325744)
[»] chr4 (1 HSPs)
chr4 (71-142)||(17178795-17178866)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 31158005 - 31158180
Alignment:
Q  19 ttataacacctttgattaatttgaagtatggctcccaaatctgacttgcatagaaatgttgcagattataaacctagcgtttggggagattatttccttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31158005 ttataacacctttgattaatttgaagtatggctcccaaatctgacttgcatagaaatgttgcagattataaacctagcgtttggggagattatttccttc 31158104  T
Q  119 gatatgcttctgaatctatggtacgtaaacatttctagattattatatggtacacaagtatatgctatctccgttc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31158105 gatatgcttctgaatctatggtacgtaaacatttctagattattatatggtacacaagtatatgctacctccgttc 31158180  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 31198092 - 31198181
Alignment:
Q  53 ccaaatctgacttgcatagaaatgttgcagattataaacctagcgtttggggagattatttccttcgatatgcttctgaatctatggtac 142  Q
    |||| |||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  31198092 ccaattctgacatgcatagaaatgttgctgattttcaacctagcgtttggggagattatttccttcgctatgcttcagaatctatggtac 31198181  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 41352780 - 41352693
Alignment:
Q  55 aaatctgacttgcatagaaatgttgcagattataaacctagcgtttggggagattatttccttcgatatgcttctgaatctatggtac 142  Q
    ||||||||| | |||||||||||||| |||| | | |||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  41352780 aaatctgaccttcatagaaatgttgccgattttcaccctaacgtttggggagattatttccttcaatatgcttcagaatctatggtac 41352693  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 25791651 - 25791739
Alignment:
Q  53 ccaaatctgacttgcatagaaatgttgcagattataaacctagcgtttggggagattatttccttcgatatgcttctgaatctatggta 141  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  25791651 ccaaatctgacttgcgtagaaatgttgcagattatcaacctagcgtttggggagattatttcattcaatatgcttcagaatctatggta 25791739  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 2325656 - 2325744
Alignment:
Q  53 ccaaatctgacttgcatagaaatgttgcagattataaacctagcgtttggggagattatttccttcgatatgcttctgaatctatggta 141  Q
    |||||||||||||||| |||||| |||||||||   | ||| |||||||||||||||||||| ||| ||||| ||| |||||| |||||    
T  2325656 ccaaatctgacttgcaaagaaatcttgcagatttccacccttgcgtttggggagattatttcattcaatatgattcagaatctgtggta 2325744  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 17178795 - 17178866
Alignment:
Q  71 gaaatgttgcagattataaacctagcgtttggggagattatttccttcgatatgcttctgaatctatggtac 142  Q
    |||||||||| |||||| | |||||| |||||   ||||||||||||| ||||||||| |||||||||||||    
T  17178795 gaaatgttgctgattatcaccctagcatttggaaggattatttccttcaatatgcttcagaatctatggtac 17178866  T

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