View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16930_low_8 (Length: 333)

Name: NF16930_low_8
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16930_low_8
NF16930_low_8
[»] chr1 (12 HSPs)
chr1 (182-288)||(37167701-37167806)
chr1 (64-236)||(40122533-40122704)
chr1 (107-288)||(8551167-8551347)
chr1 (108-288)||(47114574-47114753)
chr1 (1-35)||(3847385-3847419)
chr1 (3-35)||(8551053-8551085)
chr1 (1-40)||(13138238-13138277)
chr1 (1-40)||(23555529-23555568)
chr1 (1-40)||(40122462-40122501)
chr1 (1-35)||(197172-197206)
chr1 (108-157)||(34602907-34602957)
chr1 (108-157)||(34603126-34603176)
[»] chr5 (9 HSPs)
chr5 (1-236)||(16451750-16451985)
chr5 (108-254)||(27638202-27638347)
chr5 (64-288)||(31182580-31182805)
chr5 (1-35)||(5887680-5887714)
chr5 (1-35)||(16649886-16649920)
chr5 (1-35)||(31182843-31182877)
chr5 (130-238)||(5887818-5887925)
chr5 (1-35)||(8566211-8566245)
chr5 (3-35)||(33831550-33831582)
[»] chr3 (16 HSPs)
chr3 (64-240)||(32744764-32744940)
chr3 (108-254)||(39153739-39153884)
chr3 (108-288)||(41820111-41820290)
chr3 (286-328)||(15824238-15824280)
chr3 (130-240)||(22835404-22835513)
chr3 (1-35)||(39153625-39153659)
chr3 (108-288)||(46859872-46860051)
chr3 (3-35)||(760717-760749)
chr3 (3-35)||(9581153-9581185)
chr3 (3-35)||(19684155-19684187)
chr3 (1-32)||(26386745-26386776)
chr3 (1-40)||(32744690-32744729)
chr3 (1-35)||(22835266-22835300)
chr3 (1-33)||(29196665-29196697)
chr3 (3-35)||(29682229-29682261)
chr3 (196-236)||(37466786-37466826)
[»] chr7 (11 HSPs)
chr7 (107-288)||(25615465-25615645)
chr7 (108-288)||(3258396-3258575)
chr7 (69-236)||(31518465-31518632)
chr7 (64-288)||(41649345-41649570)
chr7 (1-35)||(38671486-38671520)
chr7 (1-40)||(12098136-12098175)
chr7 (1-40)||(31105657-31105696)
chr7 (1-40)||(36146686-36146725)
chr7 (3-40)||(31518660-31518697)
chr7 (3-35)||(25615733-25615765)
chr7 (3-35)||(41649275-41649307)
[»] chr8 (7 HSPs)
chr8 (74-247)||(1292799-1292972)
chr8 (1-40)||(10929666-10929705)
chr8 (3-35)||(6598842-6598874)
chr8 (3-35)||(6674295-6674327)
chr8 (1-35)||(3303934-3303968)
chr8 (64-157)||(41365185-41365278)
chr8 (7-35)||(4743463-4743491)
[»] chr2 (13 HSPs)
chr2 (114-165)||(7815662-7815713)
chr2 (64-254)||(724080-724269)
chr2 (1-35)||(11151855-11151889)
chr2 (1-35)||(11690371-11690405)
chr2 (1-35)||(42362222-42362256)
chr2 (108-254)||(42288696-42288841)
chr2 (201-288)||(14635199-14635286)
chr2 (195-254)||(42361995-42362054)
chr2 (1-35)||(14202671-14202705)
chr2 (1-35)||(14634090-14634124)
chr2 (1-43)||(33162714-33162756)
chr2 (1-35)||(34140035-34140069)
chr2 (1-41)||(11049401-11049441)
[»] chr6 (6 HSPs)
chr6 (108-245)||(28137790-28137926)
chr6 (1-40)||(26954549-26954588)
chr6 (128-245)||(5043072-5043188)
chr6 (3-35)||(16567076-16567108)
chr6 (4-33)||(16568915-16568944)
chr6 (3-35)||(28137674-28137706)
[»] chr4 (10 HSPs)
chr4 (51-167)||(26699978-26700093)
chr4 (181-240)||(47038856-47038915)
chr4 (108-288)||(378780-378959)
chr4 (1-35)||(5871690-5871724)
chr4 (109-236)||(41963869-41963995)
chr4 (1-40)||(46147619-46147658)
chr4 (128-288)||(5869995-5870154)
chr4 (1-35)||(13009695-13009729)
chr4 (1-35)||(24968981-24969015)
chr4 (1-43)||(36463666-36463708)


Alignment Details
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 37167806 - 37167701
Alignment:
Q  182 aatcgcgccacgattttgccttcagcagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagc 281  Q
    |||||||||||||||| ||||||||||||||||||   ||||||||| ||||||||||| |||| |||||||| | |  | |||||||||||||| ||||    
T  37167806 aatcgcgccacgattt-gccttcagcagaaaccatacgttctgccaacaaaatcgtgtcacgccactgaaaatcgcgccacaattttcagctttcacagc 37167708  T
Q  282 atcacaa 288  Q
    |||||||    
T  37167707 atcacaa 37167701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 236
Target Start/End: Original strand, 40122533 - 40122704
Alignment:
Q  64 cttaaatagcacacaataacagacaaaatcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaa 163  Q
    ||||||||| ||||| | ||||||||||||| ||  |||| | ||||||||||||||| ||   |||||||||||||||||  ||||||||||| | |||    
T  40122533 cttaaatagtacacagtgacagacaaaatcgcgtcgcgctagtgaaaatcgcgccacggttgaagcgtacgacccaaggtacgacaaccttatccacaaa 40122632  T
Q  164 tcacgtcacgactaagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgccaagaaaatcg 236  Q
    ||  |||||| ||     ||||| ||||||| |||||||||||||||||||||  |||||||||  |||||||    
T  40122633 tcgtgtcacgcctgcaccaatcgtgccacga-tttgccttcagcagaaaccatccattctgccaccaaaatcg 40122704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 288
Target Start/End: Original strand, 8551167 - 8551347
Alignment:
Q  107 gaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgact-aagaaaatcgcgccacgattttgccttca 205  Q
    ||||||||||||||| ||   |||||||||||||||||  ||||||||||| | ||||| ||||||| ||  | ||||||| ||||||||||   |||||    
T  8551167 gaaaatcgcgccacggttgaagcgtacgacccaaggtacgacaaccttatccacaaatcgcgtcacggctgcacaaaatcgtgccacgattt--gcttca 8551264  T
Q  206 gcagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    |||||||||||  |||||||||  ||||||| | | ||||||||||||| | |  |  ||||||||||||| || ||||||||    
T  8551265 gcagaaaccatccattctgccagcaaaatcgcgccacgcctctgaaaatcgcgccacgattttcagctttcacaacatcacaa 8551347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 288
Target Start/End: Complemental strand, 47114753 - 47114574
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcag 206  Q
    |||||||||||||| || |||| ||||||||||||||| |||| ||||||| |||||||  ||||||    | |||||||||||| |||||   ||||||    
T  47114753 aaaatcgcgccacggttcattgtgtacgacccaaggtacaacagccttatccaaaaatcgtgtcacgctgcacaaaatcgcgccatgattt--gcttcag 47114656  T
Q  207 cagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    ||||||||||  ||||| |||  |||||||   | ||||||||||||| | |  |  ||||||||||||| || ||||||||    
T  47114655 cagaaaccatccattctaccagcaaaatcgcaccacgcctctgaaaatcgcgccacgattttcagctttcacaacatcacaa 47114574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3847385 - 3847419
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3847385 acctcctttgatttcccaagttttcctctcttgaa 3847419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 8551053 - 8551085
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  8551053 ctcctttgatttcccaagttttcctctcttgaa 8551085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13138238 - 13138277
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  13138238 acctcctttgatttcccaagtttttctctcttgaagctct 13138277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23555529 - 23555568
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  23555529 acctcctttgatttcccaagtttttctctcttgaagctct 23555568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40122462 - 40122501
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  40122462 acctcctttgatttcccaagtttttctctcttgaacctct 40122501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 197172 - 197206
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  197172 acctcctttgattttccaagttttcctctcttgaa 197206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 34602907 - 34602957
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatc 157  Q
    ||||||||||||||||| |||| ||||||||||||||| ||| ||||||||    
T  34602907 aaaatcgcgccacgattcattgtgtacgacccaaggtacaacgaccttatc 34602957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 34603176 - 34603126
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatc 157  Q
    ||||||||||||||||| |||| ||||||||||||||| ||| ||||||||    
T  34603176 aaaatcgcgccacgattcattgtgtacgacccaaggtacaacgaccttatc 34603126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 16451985 - 16451750
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactctactnnnnnnntgaagtgtgaaggcttaaatagcacacaataacagacaaaatcgtgttac 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |        |||| ||  || ||||| |||| ||||| | ||| ||||||||||||  |    
T  16451985 acctcctttgatttcccaagttttcctctcttgaagctcttcctcaaaaatgaactga-aatgcttatatagaacacagtgacaaacaaaatcgtgtcgc 16451887  T
Q  101 gcttgagaaaa-tcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgacta-agaaaatcgcgccacgatttt 198  Q
    || || ||||| |||  ||||||||   ||||| ||||||| ||| |||| ||||||| | ||||| ||||||| ||  | |||||||||||||||| ||    
T  16451886 gcctgtgaaaaatcgtaccacgatttaagcgtatgacccaatgtacaacagccttatccagaaatcgcgtcacgcctgtacaaaatcgcgccacgatatt 16451787  T
Q  199 gccttcagcagaaaccatttattctgccaagaaaatcg 236  Q
     | |||||||||||||||  ||||||||||||||||||    
T  16451786 tc-ttcagcagaaaccatccattctgccaagaaaatcg 16451750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 27638202 - 27638347
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcag 206  Q
    |||||||||||||| || |||| ||||||||||||||| ||  |||||||||| |||||  ||||||    | ||||||||||||| ||||   ||||      
T  27638202 aaaatcgcgccacggttcattgtgtacgacccaaggtacaatgaccttatctagaaatcgtgtcacgctgcacaaaatcgcgccacaatttg--cttcga 27638299  T
Q  207 cagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaat 254  Q
    ||||||||||  |||||||||  ||||||||| | |||||||||||||    
T  27638300 cagaaaccatccattctgccagcaaaatcgtgccacgcctctgaaaat 27638347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 288
Target Start/End: Complemental strand, 31182805 - 31182580
Alignment:
Q  64 cttaaatagcacacaataacagacaaaa-tcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaa 162  Q
    ||||||||| ||||| | |||||||||| ||| | | ||| || ||||||||||||||| ||   |||||||||||||||||  ||||||||||| | ||    
T  31182805 cttaaatagtacacagtgacagacaaaaatcgcgctgcgcctgtgaaaatcgcgccacggttgaagcgtacgacccaaggtacgacaaccttatccacaa 31182706  T
Q  163 atcacgtcacgact-aagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgcca-agaaaatcgtgtcgcgcctctgaaaatggtggt 260  Q
    ||| ||||||  ||  | ||||||||||||||||||   |||||||| |||||||  ||| |||||   ||||||| | | || |||||||||| | | |    
T  31182705 atcgcgtcactcctgcacaaaatcgcgccacgattt--gcttcagcaaaaaccatccattatgccagcaaaaatcgcgccacgtctctgaaaatcgcgct 31182608  T
Q  261 ataattttcagctttcgcagcatcacaa 288  Q
    |  ||||||||||||| || ||||||||    
T  31182607 acgattttcagctttcacaacatcacaa 31182580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5887680 - 5887714
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5887680 acctcctttgatttcccaagttttcctctcttgaa 5887714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16649886 - 16649920
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  16649886 acctcctttgatttcccaagttttcctctcttgaa 16649920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31182877 - 31182843
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31182877 acctcctttgatttcccaagttttcctctcttgaa 31182843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 5887818 - 5887925
Alignment:
Q  130 gtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgccaag 229  Q
    |||||||||||| ||  ||||||||||| | ||||| ||||||  ||    ||||||| |||||||||| |||||||||||||||||   |||||||||     
T  5887818 gtacgacccaagttacgacaaccttatccataaatcgcgtcacacctgcacaaatcgcaccacgatttt-ccttcagcagaaaccatacgttctgccaac 5887916  T
Q  230 aaaatcgtg 238  Q
    |||||||||    
T  5887917 aaaatcgtg 5887925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8566211 - 8566245
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  8566211 acctcatttgatttcccaagttttcctctcttgaa 8566245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 33831582 - 33831550
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    ||||||||||||||||||||||||||| |||||    
T  33831582 ctcctttgatttcccaagttttcctcttttgaa 33831550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 32744764 - 32744940
Alignment:
Q  64 cttaaatagcacacaataacagacaaaatcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaa 163  Q
    ||||||||| ||||| | |||||||||||||||| ||||     ||||||| | |||||||  || |||||||| ||||||  ||||||||||| | |||    
T  32744764 cttaaatagtacacagtgacagacaaaatcgtgtcacgccatccaaaatcgtgtcacgattgatgagtacgaccaaaggtacgacaaccttatccagaaa 32744863  T
Q  164 tcacgtcacgactaagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgccaagaaaatcgtgtc 240  Q
    || ||| ||| ||    |||||| |||||||||||||||||||||| ||||||   ||||||||| |||||||||||    
T  32744864 tcgcgttacgcctgcacaaatcgtgccacgattttgccttcagcaggaaccatacgttctgccaacaaaatcgtgtc 32744940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 39153739 - 39153884
Alignment:
Q  108 aaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcagc 207  Q
    ||||||| | |||||||  || |||||||||||||||  ||||||||||| | ||||| ||||||| ||    |||||||| |||| |||||||||||||    
T  39153739 aaaatcgtgtcacgattgatgagtacgacccaaggtacgacaaccttatccataaatcgcgtcacgcctgcacaaatcgcgtcacg-ttttgccttcagc 39153837  T
Q  208 agaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaat 254  Q
    |||||||||  |||||||||  ||||||||| |||||| || |||||    
T  39153838 agaaaccatccattctgccatcaaaatcgtgacgcgccactcaaaat 39153884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 288
Target Start/End: Original strand, 41820111 - 41820290
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgacta-agaaaatcgcgccacgattttgccttca 205  Q
    ||||||| |||||| || |||| ||||||||||||||| |||  ||||||||| |||||  ||||| |||  | ||||||| ||||||||||   |||||    
T  41820111 aaaatcgtgccacggttcattgtgtacgacccaaggtacaacgtccttatctagaaatcgtgtcac-actgcacaaaatcgtgccacgatttg--cttca 41820207  T
Q  206 gcagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    |||||||||||  |||||||||  ||||||| | | ||||||||||||| | |  |  ||||||||||||| |||||||||||    
T  41820208 gcagaaaccatccattctgccagcaaaatcgcgccacgcctctgaaaatcgcgccacgattttcagctttcacagcatcacaa 41820290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 15824238 - 15824280
Alignment:
Q  286 caactacaccaagtagttccacaagttccaaccctttgcttct 328  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  15824238 caactacaccaagtagttccacaagcttcaaccctttgcttct 15824280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 22835404 - 22835513
Alignment:
Q  130 gtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgccaag 229  Q
    |||||||| ||||||  ||||||||||| | ||||| |||||||  |    |||||||||||||||||| |||||||||||||||||   |||||||||     
T  22835404 gtacgacctaaggtacgacaaccttatccataaatcgcgtcacgcatgcacaaatcgcgccacgatttt-ccttcagcagaaaccatacgttctgccaac 22835502  T
Q  230 aaaatcgtgtc 240  Q
    ||||| |||||    
T  22835503 aaaattgtgtc 22835513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39153625 - 39153659
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  39153625 acctcctttgatttcccaagttttcctctcttgaa 39153659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 288
Target Start/End: Complemental strand, 46860051 - 46859872
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcag 206  Q
    |||||||||||||| || |||| |||||| |||||||| ||| |||||||| | |||||  ||||||    | ||||||||||||||||||   ||||||    
T  46860051 aaaatcgcgccacggtttattgtgtacgatccaaggtacaacgaccttatccagaaatcgtgtcacgctgcacaaaatcgcgccacgatttg--cttcag 46859954  T
Q  207 cagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    ||||||||||  ||| |||||  ||||||| | |  |||||||||||| | |  |  ||||||| ||||| |||||||||||    
T  46859953 cagaaaccatccattttgccagcaaaatcgcgccatgcctctgaaaatcgcgccacgattttcatctttcacagcatcacaa 46859872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 760749 - 760717
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  760749 ctcctttgatttcccaagttttcctctcttgaa 760717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 9581185 - 9581153
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  9581185 ctcctttgatttcccaagttttcctctcttgaa 9581153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 19684155 - 19684187
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  19684155 ctcctttgatttcccaagttttcctctcttgaa 19684187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26386745 - 26386776
Alignment:
Q  1 acctcctttgatttcccaagttttcctctctt 32  Q
    ||||||||||||||||||||||||||||||||    
T  26386745 acctcctttgatttcccaagttttcctctctt 26386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32744690 - 32744729
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  32744690 acctcctttgatttcccaagtttttctctcttgaagctct 32744729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22835266 - 22835300
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  22835266 acctcctttgattttccaagttttcctctcttgaa 22835300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29196665 - 29196697
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttg 33  Q
    |||||||||||||||||||||||| ||||||||    
T  29196665 acctcctttgatttcccaagtttttctctcttg 29196697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 29682261 - 29682229
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||| ||||    
T  29682261 ctcctttgatttcccaagttttcctctcgtgaa 29682229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 37466786 - 37466826
Alignment:
Q  196 tttgccttcagcagaaaccatttattctgccaagaaaatcg 236  Q
    |||||||||||||||||||||  ||||||||| ||||||||    
T  37466786 tttgccttcagcagaaaccatccattctgccatgaaaatcg 37466826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 288
Target Start/End: Complemental strand, 25615645 - 25615465
Alignment:
Q  107 gaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgacta-agaaaatcgcgccacgattttgccttca 205  Q
    |||||||||| |||| ||   |||||||||||||||||  ||||||||||| | |||||   ||||| ||  | ||||||||||||||||||   |||||    
T  25615645 gaaaatcgcgtcacggttgaagcgtacgacccaaggtacgacaaccttatcgacaaatcgtatcacggctgcacaaaatcgcgccacgatttg--cttca 25615548  T
Q  206 gcagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    |||||||||||  |||||||||  ||||||| | | ||||||||||||| | |  | |||||||||||||| |||||||||||    
T  25615547 gcagaaaccatccattctgccagcaaaatcgcgccacgcctctgaaaatcgcgccacaattttcagctttcacagcatcacaa 25615465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 288
Target Start/End: Complemental strand, 3258575 - 3258396
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcag 206  Q
    |||||||||||||| || |||| ||||||||||||||| ||| |||||||| | ||||| |||||||    | ||||||||||||||||||   ||||||    
T  3258575 aaaatcgcgccacggttcattgtgtacgacccaaggtacaacgaccttatccacaaatcgcgtcacggtgcacaaaatcgcgccacgattt--gcttcag 3258478  T
Q  207 cagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    ||||||||||  |||||||||  ||||||| | | | |||||||||||   |  |  ||||||||||||| |||||||||||    
T  3258477 cagaaaccatccattctgccagcaaaatcgcgccacacctctgaaaatcacgccacgattttcagctttcacagcatcacaa 3258396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 31518632 - 31518465
Alignment:
Q  69 atagcacacaataacagacaaaatcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatcacg 168  Q
    |||| ||||||| | ||||||||| |||   ||| ||||||||||||||||| |||||| | ||||||||||||||  ||||||||||| | ||||| |     
T  31518632 atagtacacaatgaaagacaaaattgtgccgcgcctgagaaaatcgcgccacaattatttcatacgacccaaggtacgacaaccttatccagaaatcgca 31518533  T
Q  169 tcacgact-aagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgccaagaaaatcg 236  Q
    ||||| ||  | |||||||| |||||| ||| ||||||||| |||||||  ||||| ||| ||||||||    
T  31518532 tcacgcctgcacaaaatcgcaccacga-tttaccttcagcataaaccatccattctaccaggaaaatcg 31518465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 288
Target Start/End: Original strand, 41649345 - 41649570
Alignment:
Q  64 cttaaatagcacacaataacagacaaaa-tcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaa 162  Q
    ||||||||| ||||| | |||||||||| ||||||  |||  | ||||||||||||||| ||   |||||||||||||||||  ||||||||||| | ||    
T  41649345 cttaaatagtacacagtgacagacaaaaatcgtgtcgcgccagtgaaaatcgcgccacggttgaagcgtacgacccaaggtacgacaaccttatccacaa 41649444  T
Q  163 atcacgtcacgact-aagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgcca-agaaaatcgtgtcgcgcctctgaaaatggtggt 260  Q
    ||| ||||||| ||  | ||||| ||||||||||||   ||| ||||||||||||  |||||||||   ||||| | | | ||||||||||||| | |      
T  41649445 atcgcgtcacgcctgcacaaaattgcgccacgattt--gcttaagcagaaaccatccattctgccagcaaaaattgcgccacgcctctgaaaatcgcgcc 41649542  T
Q  261 ataattttcagctttcgcagcatcacaa 288  Q
    |  ||||||||||||| |||||||||||    
T  41649543 acgattttcagctttcacagcatcacaa 41649570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38671486 - 38671520
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38671486 acctcctttgatttcccaagttttcctctcttgaa 38671520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12098136 - 12098175
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  12098136 acctcctttgatttcccaagtttttctctcttgaagctct 12098175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31105657 - 31105696
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  31105657 acctcctttgatttctcaagttttcctctcttgaagctct 31105696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36146686 - 36146725
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  36146686 acctcctttgatttcccaagtttttctctcttgaagctct 36146725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 31518697 - 31518660
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  31518697 ctcctttgatttccaaagttttcctctcttgaagctct 31518660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 25615765 - 25615733
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||| ||||||||||||||||||    
T  25615765 ctcctttgatttcctaagttttcctctcttgaa 25615733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 41649275 - 41649307
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||| ||||||||||    
T  41649275 ctcctttgatttcccaagttttgctctcttgaa 41649307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 247
Target Start/End: Original strand, 1292799 - 1292972
Alignment:
Q  74 acacaataacagacaaaatcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacg 173  Q
    ||||||| ||||||||||||| |  |||| |  |||||||||||||| |||  ||||||||||||||||||  ||||| ||||| | |||||  ||||||    
T  1292799 acacaatgacagacaaaatcgcgccacgcctacgaaaatcgcgccacaatttatgcgtacgacccaaggtacgacaactttatccagaaatcgtgtcacg 1292898  T
Q  174 acta-agaaaatcgcgccacgattttgccttcagcagaaaccatttattctgccaagaaaatcgtgtcgcgcctc 247  Q
     ||| |  ||||||||||| |||||| |||||||||||||||||  ||| |  ||||||||||||| | ||||||    
T  1292899 cctatacgaaatcgcgccatgatttt-ccttcagcagaaaccatccattatttcaagaaaatcgtggcacgcctc 1292972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10929705 - 10929666
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10929705 acctcctttgatttcccaagttttcctctcttgaagctct 10929666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 6598874 - 6598842
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  6598874 ctcctttgatttcccaagttttcctctcttgaa 6598842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 6674327 - 6674295
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  6674327 ctcctttgatttcccaagttttcctctcttgaa 6674295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3303934 - 3303968
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  3303934 acctcctttgatttcccaagtttttctctcttgaa 3303968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 41365185 - 41365278
Alignment:
Q  64 cttaaatagcacacaataacagacaaaatcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatc 157  Q
    ||||||||| ||||| | ||||||||||||| |   |||  ||||||||||||||||| ||   ||||| |||||||||||  |||||||||||    
T  41365185 cttaaatagtacacagtgacagacaaaatcgcgccgcgccagagaaaatcgcgccacggttgaagcgtatgacccaaggtacgacaaccttatc 41365278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 4743463 - 4743491
Alignment:
Q  7 tttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||    
T  4743463 tttgatttcccaagttttcctctcttgaa 4743491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 7815662 - 7815713
Alignment:
Q  114 gcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatc 165  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  7815662 gcgccacgattattgcgtacgacccaaggtacaactgccttatctaaaaatc 7815713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 254
Target Start/End: Original strand, 724080 - 724269
Alignment:
Q  64 cttaaatagcacacaataacagacaaaatcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaa 163  Q
    ||||||||| ||||| | ||||||||||||| ||  |||  | ||||||||||||||| ||   |||||||||||||||||  |||| |||||| | |||    
T  724080 cttaaatagtacacagtgacagacaaaatcgcgtcgcgccagtgaaaatcgcgccacggttgaagcgtacgacccaaggtacgacaatcttatccacaaa 724179  T
Q  164 tcacgtcacgacta-agaaaatcgcgccacgattttgccttcagcagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaat 254  Q
    ||  |||||  ||| | ||||||||||||||||||   ||||| ||||||||||  ||||| |||  ||||||| | | |||| ||||||||    
T  724180 tcgtgtcacacctacacaaaatcgcgccacgattt--gcttcaacagaaaccatccattctaccagcaaaatcgcgccacgccactgaaaat 724269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11151855 - 11151889
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11151855 acctcctttgatttcccaagttttcctctcttgaa 11151889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11690405 - 11690371
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11690405 acctcctttgatttcccaagttttcctctcttgaa 11690371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42362256 - 42362222
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42362256 acctcctttgatttcccaagttttcctctcttgaa 42362222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 42288696 - 42288841
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcag 206  Q
    |||||||||||||| || |||| ||||||||||||||| |||||||||||| | |||||  |||| ||   | |||||| |||||||||||   |||||     
T  42288696 aaaatcgcgccacggttcattgtgtacgacccaaggtacaacaaccttatcaagaaatcgtgtcatgatgcacaaaatcacgccacgattt--gcttcaa 42288793  T
Q  207 cagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaat 254  Q
    ||||||||||  ||||| |||  ||||||  | | |||||||||||||    
T  42288794 cagaaaccatccattctaccagcaaaatcacgccacgcctctgaaaat 42288841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 14635199 - 14635286
Alignment:
Q  201 cttcagcagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    |||||||| |||||||  |||||||||  ||||||||| | ||||||||||||| | |  | |||||| ||||||| |||||||||||    
T  14635199 cttcagcataaaccatccattctgccagcaaaatcgtgccacgcctctgaaaatcgcgccacaatttttagctttcacagcatcacaa 14635286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 42362054 - 42361995
Alignment:
Q  195 ttttgccttcagcagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaat 254  Q
    ||||||||||||||||||||||  |||||||||  ||||||||| |||||| || |||||    
T  42362054 ttttgccttcagcagaaaccatccattctgccaccaaaatcgtgacgcgccactcaaaat 42361995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14202671 - 14202705
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  14202671 acctcatttgatttcccaagttttcctctcttgaa 14202705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14634090 - 14634124
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  14634090 acctcctttgatttcccaagttttcttctcttgaa 14634124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33162714 - 33162756
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactctact 43  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  33162714 acctcctttgatttcccaagtttctctctcttgaaattctact 33162756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34140035 - 34140069
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  34140035 acctcctttgattttccaagttttcctctcttgaa 34140069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11049441 - 11049401
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactcta 41  Q
    |||||||||||||||||||||||  |||||||||| |||||    
T  11049441 acctcctttgatttcccaagtttctctctcttgaagctcta 11049401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 28137790 - 28137926
Alignment:
Q  108 aaaatcgcgccacgattattgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcagc 207  Q
    ||||||| | |||||||  || |||||||||||||||  ||||||||||| | ||||| | ||||| ||    |||||| ||||| ||||| ||||||||    
T  28137790 aaaatcgtgtcacgattgatgagtacgacccaaggtacgacaaccttatccataaatcgcatcacgcctgcacaaatcgtgccacaatttt-ccttcagc 28137888  T
Q  208 agaaaccatttattctgccaagaaaatcgtgtcgcgcc 245  Q
    |||||||||   ||||||||| ||||||||||| ||||    
T  28137889 agaaaccatacgttctgccaacaaaatcgtgtcacgcc 28137926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26954549 - 26954588
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  26954549 acctcctttgatttcccaagttttcctctcttgaagctct 26954588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 5043188 - 5043072
Alignment:
Q  128 gcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcagcagaaaccatttattctgcca 227  Q
    |||||||| ||||||||  | ||||||||| | ||||| ||||||| ||    ||||||| ||||||||| ||||||||||||||||||   ||||||||    
T  5043188 gcgtacgatccaaggtacgataaccttatccacaaatcgcgtcacgcctgcacaaatcgcaccacgattt-gccttcagcagaaaccatacgttctgcca 5043090  T
Q  228 agaaaatcgtgtcgcgcc 245  Q
    | ||||| ||||| ||||    
T  5043089 acaaaattgtgtcacgcc 5043072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 16567108 - 16567076
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  16567108 ctcctttgatttcccaagttttcctctcttgaa 16567076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 16568944 - 16568915
Alignment:
Q  4 tcctttgatttcccaagttttcctctcttg 33  Q
    ||||||||||||||||||||||||||||||    
T  16568944 tcctttgatttcccaagttttcctctcttg 16568915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 28137674 - 28137706
Alignment:
Q  3 ctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||| ||||||||||||||||||||    
T  28137674 ctcctttgattttccaagttttcctctcttgaa 28137706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 26699978 - 26700093
Alignment:
Q  51 tgaagtgtgaaggcttaaatagcacacaataacagacaaaatcgtgttacgcttgagaaaatcgcgccacgattattgcgtacgacccaaggtataacaa 150  Q
    |||||||||||  ||||||||| ||||| | |||||||||||||||| ||| |||  |||| ||||  |||||| |  |||||||||||||||| || ||    
T  26699978 tgaagtgtgaaaacttaaatagtacacagtgacagacaaaatcgtgtcacgattg-taaaaccgcgttacgattgtaacgtacgacccaaggtacaaaaa 26700076  T
Q  151 ccttatctaaaaatcac 167  Q
    ||||||| | |||||||    
T  26700077 ccttatccacaaatcac 26700093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 47038856 - 47038915
Alignment:
Q  181 aaatcgcgccacgattttgccttcagcagaaaccatttattctgccaagaaaatcgtgtc 240  Q
    ||||||||||||||||||||||||||||| ||||||   ||||||||| ||||| |||||    
T  47038856 aaatcgcgccacgattttgccttcagcaggaaccatacgttctgccaacaaaattgtgtc 47038915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 288
Target Start/End: Complemental strand, 378959 - 378780
Alignment:
Q  108 aaaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcag 206  Q
    ||||||| |||||| || |||| |||||||||||| || |||| ||||||| | |||||  ||||||    | ||||||||| ||| ||||   ||||||    
T  378959 aaaatcgtgccacggttcattgtgtacgacccaagatacaacagccttatccacaaatcgtgtcacgctgcacaaaatcgcgtcacaatttg--cttcag 378862  T
Q  207 cagaaaccatttattctgccaagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
     |||||||||  |||||||||| ||||||| | | ||||||||||||| | |  |  ||| |||||||||||||||||||||    
T  378861 tagaaaccatccattctgccaataaaatcgcgccacgcctctgaaaatcgcgccacgattctcagctttcgcagcatcacaa 378780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5871724 - 5871690
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5871724 acctcctttgatttcccaagttttcctctcttgaa 5871690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 41963995 - 41963869
Alignment:
Q  109 aaatcgcgccacgatt-attgcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgactaagaaaatcgcgccacgattttgccttcagc 207  Q
    ||||||||||||| || |||| ||||||||||||||| ||| |||||||| | |||||  ||||||    | ||||||||||||||||||   ||||| |    
T  41963995 aaatcgcgccacggttcattgtgtacgacccaaggtacaacgaccttatccacaaatcgtgtcacggtgcacaaaatcgcgccacgattt--gcttcaac 41963898  T
Q  208 agaaaccatttattctgccaagaaaatcg 236  Q
    |||||||||  |||||||||  |||||||    
T  41963897 agaaaccatccattctgccagcaaaatcg 41963869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 46147619 - 46147658
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactct 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  46147619 acctcctttgatttcccaagtttttctctcttgaagctct 46147658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 288
Target Start/End: Complemental strand, 5870154 - 5869995
Alignment:
Q  128 gcgtacgacccaaggtataacaaccttatctaaaaatcacgtcacgacta-agaaaatcgcgccacgattttgccttcagcagaaaccatttattctgcc 226  Q
    ||||||||||||||||   |||| |||||| | |||||  |||||| ||  | |||||||| |||||||||   ||| ||||||||||||  ||||||||    
T  5870154 gcgtacgacccaaggttcgacaaacttatccacaaatcgtgtcacgcctgcacaaaatcgcaccacgatttg--cttaagcagaaaccatccattctgcc 5870057  T
Q  227 aagaaaatcgtgtcgcgcctctgaaaatggtggtataattttcagctttcgcagcatcacaa 288  Q
    |  ||||||||| | ||||||||||||| | |  |  ||||||||||||| || ||||||||    
T  5870056 agcaaaatcgtgccacgcctctgaaaatcgcgccacgattttcagctttcacaacatcacaa 5869995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13009695 - 13009729
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  13009695 acctcatttgatttcccaagttttcctctcttgaa 13009729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24969015 - 24968981
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24969015 acctcctttgatttcccaagtttttctctcttgaa 24968981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36463666 - 36463708
Alignment:
Q  1 acctcctttgatttcccaagttttcctctcttgaaactctact 43  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  36463666 acctcctatgatttcccaagtttttctctcttgaagctctact 36463708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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