View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16931_high_1 (Length: 951)
Name: NF16931_high_1
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_1 |
 | |
|
| [»] scaffold1408 (2 HSPs) |
| | |
|
| [»] scaffold0428 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 886; Significance: 0; HSPs: 44)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 886; E-Value: 0
Query Start/End: Original strand, 34 - 935
Target Start/End: Original strand, 33387351 - 33388252
Alignment:
| Q |
34 |
atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387351 |
atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact |
33387450 |
T |
|
| Q |
134 |
tgttgaattttttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33387451 |
tgttgaattttttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtagttgtgtcccatct |
33387550 |
T |
|
| Q |
234 |
tcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacc |
333 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387551 |
tcaattgccaaaatcttacacttcggagccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacc |
33387650 |
T |
|
| Q |
334 |
cgcaactcttcacctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatcca |
433 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387651 |
cgcaactcttcacctccatacccaaagcttgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatcca |
33387750 |
T |
|
| Q |
434 |
taggtgacttgatttggtcgtaacaagacctccattgagaatgactggaacactcattttgataggatgattgaaactcagtttcatattggcccatgaa |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387751 |
taggtgacttgatttggtcgtaacaagacctccattgagaatgactggaacactcattttgataggatgattgaaactcagtttcatattggcccatgaa |
33387850 |
T |
|
| Q |
534 |
aagcactctggatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagta |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387851 |
aagcactctggatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagta |
33387950 |
T |
|
| Q |
634 |
ttgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtt |
733 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33387951 |
ttgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtcggtt |
33388050 |
T |
|
| Q |
734 |
tgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccac |
833 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388051 |
tgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccac |
33388150 |
T |
|
| Q |
834 |
ccaaacttatgcttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaat |
933 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388151 |
ccaaacttatgcttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaat |
33388250 |
T |
|
| Q |
934 |
at |
935 |
Q |
| |
|
|| |
|
|
| T |
33388251 |
at |
33388252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 568 - 935
Target Start/End: Original strand, 33262357 - 33262718
Alignment:
| Q |
568 |
cacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaact |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262357 |
cacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaact |
33262456 |
T |
|
| Q |
668 |
cggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatgaaaatgtc |
767 |
Q |
| |
|
||||||||| |||||| | |||||||||||| | ||| ||||| | |||||||| |||| ||| ||| | ||| ||||||||| |||||||||||||| |
|
|
| T |
33262457 |
tggtatttcatttcctggactaacaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtc |
33262556 |
T |
|
| Q |
768 |
atgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctcacgatgatcccgcc |
867 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||||||||| || ||||||||| || ||||||| || ||||||||||||||||||| |
|
|
| T |
33262557 |
atgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaatcctgtattc------aacttatactccttctcacgatgatcccgcc |
33262650 |
T |
|
| Q |
868 |
caatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
33262651 |
caatagaggtaggagaaggaagttgaggcaaagattccaacaacctgcaatgctccaaatttaaatat |
33262718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 553 - 935
Target Start/End: Complemental strand, 33644832 - 33644456
Alignment:
| Q |
553 |
ccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctg |
652 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||| || || |
|
|
| T |
33644832 |
ccatggtaaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttg |
33644733 |
T |
|
| Q |
653 |
attgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtc |
752 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| ||||||||| || ||||||| |||| ||||||| |||| ||||||||| ||| |||||| || |
|
|
| T |
33644732 |
attgttgatccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatc |
33644633 |
T |
|
| Q |
753 |
atccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttct |
852 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||| ||||| ||||||||||| || |||||||| ||||| | || | |||| |
|
|
| T |
33644632 |
atccatgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctgaaatccagac------atcgtcattct |
33644539 |
T |
|
| Q |
853 |
cacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|| | |||||||||||||||||| | |||||||||||||| ||||||| ||| |||||||| || ||||||||||||||| |
|
|
| T |
33644538 |
catctcgttcccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatat |
33644456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 34 - 355
Target Start/End: Original strand, 33261811 - 33262117
Alignment:
| Q |
34 |
atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact |
133 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |
|
|
| T |
33261811 |
atgaataatataaaattaacaagattcttttgaattatcttcagtacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatcact |
33261910 |
T |
|
| Q |
134 |
tgttgaattttttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgtt------gtggttgtggttgtgtc |
227 |
Q |
| |
|
|||||| |||||| ||| ||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
33261911 |
tgttgactttttt---------------------ctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtc |
33261989 |
T |
|
| Q |
228 |
ccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaac |
327 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||| ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33261990 |
tcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaat |
33262089 |
T |
|
| Q |
328 |
gatacccgcaactcttcacctccatacc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33262090 |
gatacccgcaactcttcacctccatacc |
33262117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 560 - 826
Target Start/End: Original strand, 33304207 - 33304473
Alignment:
| Q |
560 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
659 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
33304207 |
aaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttg |
33304306 |
T |
|
| Q |
660 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
759 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||||||||||||| |||||| | | |||||||| ||||| |||||||| ||| |||||||||| ||||| |
|
|
| T |
33304307 |
atccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatg |
33304406 |
T |
|
| Q |
760 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt |
826 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
33304407 |
aaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgt |
33304473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 560 - 935
Target Start/End: Complemental strand, 31563109 - 31562737
Alignment:
| Q |
560 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
659 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
31563109 |
aaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
31563010 |
T |
|
| Q |
660 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
759 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||| |||| | ||| |||||||||||||||| ||||| | ||||||||| ||||||| |||||||| |
|
|
| T |
31563009 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
31562910 |
T |
|
| Q |
760 |
aaaatgtcatgctactgcaacactccctatcac------ccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctc |
853 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| ||| ||| |||||||| |||| || ||||||||| |||||| || |||||||| |
|
|
| T |
31562909 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacc-------at--ttgttctc |
31562819 |
T |
|
| Q |
854 |
acgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
31562818 |
acgacgatcccgcccaatagtggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatat |
31562737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 145 - 475
Target Start/End: Original strand, 33303782 - 33304116
Alignment:
| Q |
145 |
ttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgt------ggttgtggttgtgtcccatcttcaat |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | | |||||||| ||| |||||||||||||||| | |||| |||||||||| |||||||||| |
|
|
| T |
33303782 |
ttgtgatccatctgttgtttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaat |
33303879 |
T |
|
| Q |
239 |
tgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaa |
338 |
Q |
| |
|
||||||| |||| |||||| | ||||| ||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
33303880 |
tgccaaattcttgcacttcccagccaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccaccgatacccgcaa |
33303979 |
T |
|
| Q |
339 |
ctcttcacctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggt |
438 |
Q |
| |
|
||||||||||||| || ||| | | |||| |||||| | |||| ||| ||| |||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
33303980 |
ctcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggt |
33304079 |
T |
|
| Q |
439 |
gacttgatttggtcgtaacaagacctccattgagaat |
475 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33304080 |
gacttgatttggtcataacaagacctccattgagaat |
33304116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 568 - 935
Target Start/End: Complemental strand, 28870446 - 28870085
Alignment:
| Q |
568 |
cacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaact |
667 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
28870446 |
cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact |
28870347 |
T |
|
| Q |
668 |
cggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatgaaaatgtc |
767 |
Q |
| |
|
|||||||||||||||| ||||||||| | || || ||| |||||| || |||||| |||| ||| |||| ||| |||||| ||||||||||||||| | |
|
|
| T |
28870346 |
tggtatttcacttcctggagtaacaatattaaacgcatccaaatagacaaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaatgcc |
28870247 |
T |
|
| Q |
768 |
atgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctcacgatgatcccgcc |
867 |
Q |
| |
|
||||||| |||| ||||| ||||| | |||||||||||||||| |||||| ||||| |||| | ||| ||| |||||| || |||||||| |
|
|
| T |
28870246 |
atgctacaacaacgttccctctcacctaaatttggacagttgaaaatgatcaaacctgttctccaggga----tat--ttgctctcacaattatcccgcc |
28870153 |
T |
|
| Q |
868 |
caatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
| |||| |||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
28870152 |
cgataggggtaggagaaggaagttgaggcaaagattcaaacaacttgcaatgctccaaatttaaatat |
28870085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 248 - 487
Target Start/End: Complemental strand, 33645156 - 33644916
Alignment:
| Q |
248 |
cttacacttcggatccaagga-attttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcac |
346 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33645156 |
cttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac |
33645057 |
T |
|
| Q |
347 |
ctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggtgacttgat |
446 |
Q |
| |
|
|| |||||||| | | | || || ||||||||||||| |||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33645056 |
cttcatacccagaccttccctctcaaaaatgtcaaaatagattcttccaaattcattataggaatctcgagggaagtagattatccataggtgacttgat |
33644957 |
T |
|
| Q |
447 |
ttggtcgtaacaagacctccattgagaatgactggaacact |
487 |
Q |
| |
|
|||||||||| |||||| |||| |||||| ||||||||||| |
|
|
| T |
33644956 |
ttggtcgtaataagaccaccatcgagaattactggaacact |
33644916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 145 - 349
Target Start/End: Original strand, 33409272 - 33409478
Alignment:
| Q |
145 |
ttgtgatccatctgttgtttcttctcggt--gtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatcttcaattgcc |
242 |
Q |
| |
|
||||||||||||||||||||||||| | | | |||||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
33409272 |
ttgtgatccatctgttgtttcttctttcttcgaagtagttatgacttgtgagatgaatgattcttgttctggttgtggttgtgtctcgccttcaattgcc |
33409371 |
T |
|
| Q |
243 |
aaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactct |
342 |
Q |
| |
|
| ||||||||||||| || ||||||||||||| ||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33409372 |
ataatcttacacttctgagccaaggaattttcatgattcatcattgtgaagttgaacttttgtaggtcttgtttacatacccaacgatacccgcaacttt |
33409471 |
T |
|
| Q |
343 |
tcacctc |
349 |
Q |
| |
|
||||||| |
|
|
| T |
33409472 |
tcacctc |
33409478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 561 - 826
Target Start/End: Original strand, 9166485 - 9166741
Alignment:
| Q |
561 |
aatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttga |
660 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||| || ||| |||| ||||||||| |
|
|
| T |
9166485 |
aatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttga |
9166584 |
T |
|
| Q |
661 |
tccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatga |
760 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||||||| ||||||| || || | |||||||||||| ||||||||| |||||||||| |
|
|
| T |
9166585 |
tccaacttggtatttcaattcctggcgtaacaatttgaatcctatcaaa---------gtgggatggtgggtttgcctgaataaattgcatcatccatga |
9166675 |
T |
|
| Q |
761 |
aaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt |
826 |
Q |
| |
|
||||||||||||||||||| ||| |||||| || || |||||||||||||| || ||||||||| |
|
|
| T |
9166676 |
aaatgtcatgctactgcaatgttccttatcactcaattctggacagttgaaaatgaccaatcctgt |
9166741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 145 - 359
Target Start/End: Original strand, 33398360 - 33398576
Alignment:
| Q |
145 |
ttgtgatccatctgttgtttcttc--tcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatcttcaattgcc |
242 |
Q |
| |
|
|||||||||||||||||||||||| || | | |||||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
33398360 |
ttgtgatccatctgttgtttcttccttcttcgaagtagttatgacttgtgagatgaatgattcttgttctggttgtggttgtgtctcgccttcaattgcc |
33398459 |
T |
|
| Q |
243 |
aaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactct |
342 |
Q |
| |
|
| |||||||||||| || | ||||||||||| ||||| ||||||| ||||| || | | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33398460 |
ataatcttacacttttgagcaaaggaattttcatgattcatcattgtgaagttcaactttcgtaggtcttgtttacatacccaacgatacccgcaactct |
33398559 |
T |
|
| Q |
343 |
tcacctccatacccaaa |
359 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
33398560 |
tcacctcaaaacccaaa |
33398576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 564 - 813
Target Start/End: Original strand, 33285321 - 33285573
Alignment:
| Q |
564 |
actgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatcc |
663 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||| || |||| |
|
|
| T |
33285321 |
actgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatcc |
33285420 |
T |
|
| Q |
664 |
aactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaatag---gcagggtaggtttgtgggtttgccttaataaattgtgtcatccatga |
760 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||| ||||| || |||||||| ||| ||| ||||| || |||||| |||||||||| |
|
|
| T |
33285421 |
aacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatga |
33285520 |
T |
|
| Q |
761 |
aaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa |
813 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
33285521 |
aaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaa |
33285573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 234 - 471
Target Start/End: Original strand, 33271219 - 33271456
Alignment:
| Q |
234 |
tcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacc |
333 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||||||||||||||| | ||||| || ||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
33271219 |
tcaattgccaaaatcttacattttggagccaaggaattttcgtgattcagcattgttatattgaactcttgtaggtcttgtttacatatccaacgatacc |
33271318 |
T |
|
| Q |
334 |
cgcaactcttcacctccatacccaaagcctgccccttaaaaat-gtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatcc |
432 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || | | || || | ||||||| ||| |||||| ||| ||||| |||| |||| | |||| |||| |
|
|
| T |
33271319 |
cgcaactcttcacctccataccc-aagccttcacccaacacatcgtaacaacagatgttttcaaatttatcataggaccctcgagggaggaagatcatcc |
33271417 |
T |
|
| Q |
433 |
ataggtgacttgatttggtcgtaacaagacctccattga |
471 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
33271418 |
ataggtgacttgatttggtcgtaataagacttcctttga |
33271456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 233 - 487
Target Start/End: Original strand, 33284987 - 33285241
Alignment:
| Q |
233 |
ttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatac |
332 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||| |||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33284987 |
ttcaattgccataatcttacacttcggagccaaggatattttgtgattcatcattgttaaattgaactcttgtaggtcttgtttacatacccaacgatat |
33285086 |
T |
|
| Q |
333 |
ccgcaactcttcacctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatcc |
432 |
Q |
| |
|
|| ||||| |||||||||||||||||| | | ||| || ||||| | ||| ||| ||| |||||| ||| ||||||||| | || ||||||||||| |
|
|
| T |
33285087 |
ccacaactgttcacctccatacccaaatcttcacccccaacaatgtaacaactgattttttcaaatttatcataggactctctagagaggtagattatcc |
33285186 |
T |
|
| Q |
433 |
ataggtgacttgatttggtcgtaacaagacctccattgagaatgactggaacact |
487 |
Q |
| |
|
|||| ||||||||||||||||||| |||| || || ||||| ||||||||||| |
|
|
| T |
33285187 |
atagatgacttgatttggtcgtaataagatatctcttaagaattactggaacact |
33285241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 553 - 935
Target Start/End: Original strand, 33057294 - 33057661
Alignment:
| Q |
553 |
ccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctg |
652 |
Q |
| |
|
|||| |||||| |||||||||||| || |||||||||||||||| |||||||||| ||||||| || ||||||| |||||||| |||||| ||||| |
|
|
| T |
33057294 |
ccatcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctg |
33057393 |
T |
|
| Q |
653 |
attgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtc |
752 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||| ||||||||| ||| || ||| | |||||||||||||||| |||||| || |
|
|
| T |
33057394 |
attgttgatccaacttggtatttcacttcctggattaactatttgaatc---tcagaagaggaa---------cgtgggtttgccttaatgaattgtttc |
33057481 |
T |
|
| Q |
753 |
atccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacc-caaactta-tgcttgtt |
850 |
Q |
| |
|
|||||| ||| ||||||||| |||||| ||||| ||||||| ||||||||||||||||| || |||||||| |||| |||| || | | || |
|
|
| T |
33057482 |
atccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctg-----caccacaaaaatagtcgtcgta |
33057576 |
T |
|
| Q |
851 |
ctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||||||||| || |||| || ||||| || ||||||||||||| ||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
33057577 |
ctcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatat |
33057661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 206 - 349
Target Start/End: Complemental strand, 28870819 - 28870677
Alignment:
| Q |
206 |
ttgttgtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgt |
305 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| |||||||||| ||||| || |||||||||||| ||| || ||||||| ||||||||| |||||| |
|
|
| T |
28870819 |
ttgttgaggttgcggttgtgtcccatcttcaatttccaaaatcttgaacttctgagccaaggaatttttgtg-ttcatcattgttaagttgaactcttgt |
28870721 |
T |
|
| Q |
306 |
aggtcttgtttacatacccaacgatacccgcaactcttcacctc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28870720 |
aggtcttgtttacatacccaacgatacccgcaactcttcacctc |
28870677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 176 - 490
Target Start/End: Original strand, 9166080 - 9166396
Alignment:
| Q |
176 |
actagttatgacttgtgacatgaatgattcttgttgtggtt-----gtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaat |
270 |
Q |
| |
|
|||||| ||||||| ||| | |||||||||||||| ||||| |||| ||| || |||| | |||||||||| |||| ||| || || |||| || | |
|
|
| T |
9166080 |
actagtcatgacttatgagacgaatgattcttgttctggttcggttgtggctgtctctcatcctaaattgccaaagtcttgcacgtccgagccaatgatt |
9166179 |
T |
|
| Q |
271 |
tttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctccatacccaaagcctgcccctt |
370 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||||||||||||||||||||||||||| || || ||| ||||||||| |||| ||||| | | ||| |
|
|
| T |
9166180 |
tttcgtgattcatcgtt---aagttgaactcttgtaggtcttgtttacatacccaacggtatccacaagtcttcaccttcatatccaaaccttcaccccg |
9166276 |
T |
|
| Q |
371 |
aaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaagacctccattg |
470 |
Q |
| |
|
|| |||||||||| ||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
9166277 |
aataatgtcaaaatggatttttccaaattcatcgtaggactctcgggggaggtagattatccataggtgactggatttggtcaaaacaagaaatccattc |
9166376 |
T |
|
| Q |
471 |
agaatgactggaacactcat |
490 |
Q |
| |
|
||||| ||| |||| ||||| |
|
|
| T |
9166377 |
agaattacttgaaccctcat |
9166396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 33282144 - 33282242
Alignment:
| Q |
41 |
atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga |
139 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
33282144 |
atataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga |
33282242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 231 - 357
Target Start/End: Original strand, 33396806 - 33396932
Alignment:
| Q |
231 |
tcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgat |
330 |
Q |
| |
|
||||||||| |||||||||| |||||| || ||||||||||||| ||||| ||||||| ||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
33396806 |
tcttcaatttccaaaatcttgcacttctgaaccaaggaattttcatgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat |
33396905 |
T |
|
| Q |
331 |
acccgcaactcttcacctccataccca |
357 |
Q |
| |
|
||| ||| ||||||||||||||||||| |
|
|
| T |
33396906 |
acctgcagctcttcacctccataccca |
33396932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 33397945 - 33398043
Alignment:
| Q |
41 |
atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga |
139 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33397945 |
atataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttgcggtcaacttgttatcacttgttga |
33398043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 231 - 357
Target Start/End: Original strand, 33407756 - 33407882
Alignment:
| Q |
231 |
tcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgat |
330 |
Q |
| |
|
||||||||| |||||||||| |||||| || ||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
33407756 |
tcttcaatttccaaaatcttgcacttctgagccaaggaattttcgtgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat |
33407855 |
T |
|
| Q |
331 |
acccgcaactcttcacctccataccca |
357 |
Q |
| |
|
||||||| |||||||||| | |||||| |
|
|
| T |
33407856 |
acccgcagctcttcaccttcgtaccca |
33407882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 33283867 - 33283972
Alignment:
| Q |
34 |
atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact |
133 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
33283867 |
atgaataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcact |
33283966 |
T |
|
| Q |
134 |
tgttga |
139 |
Q |
| |
|
| |||| |
|
|
| T |
33283967 |
tcttga |
33283972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 33408855 - 33408953
Alignment:
| Q |
41 |
atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga |
139 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
33408855 |
atataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttccggtcgacttgttatcacttgttga |
33408953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 214 - 357
Target Start/End: Original strand, 33281091 - 33281234
Alignment:
| Q |
214 |
gttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttg |
313 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |||||| || |||||||| ||| ||||| || |||| ||| |||| |||||||||||||| |
|
|
| T |
33281091 |
gttgcggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttg |
33281190 |
T |
|
| Q |
314 |
tttacatacccaacgatacccgcaactcttcacctccataccca |
357 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||| |||||| |
|
|
| T |
33281191 |
tttacatattcaacgatgcacgcaactcttcacctccgtaccca |
33281234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 568 - 824
Target Start/End: Original strand, 33409709 - 33409959
Alignment:
| Q |
568 |
cacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaact |
667 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||| |||| ||| ||| || ||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
33409709 |
cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact |
33409808 |
T |
|
| Q |
668 |
cggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatgaaaatgtc |
767 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || || | || || |||| ||||||||| ||| || |||| ||||||||||| ||| |
|
|
| T |
33409809 |
tggtatttcacttcctggagttacaatttgaagcgccgacaatt------tgttgggttgttggtttgcctgaatgaaatgtgccatccatgaaattgtg |
33409902 |
T |
|
| Q |
768 |
atgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
824 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||||||||||||| || ||||||| |
|
|
| T |
33409903 |
atgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaatcct |
33409959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 553 - 935
Target Start/End: Original strand, 33398788 - 33399146
Alignment:
| Q |
553 |
ccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctg |
652 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | | | | ||||||||| ||||||||| ||| || ||||||| ||||||||||||||| | ||| |
|
|
| T |
33398788 |
ccatggtaaatactgcacaacatacaaagtaatggctctgattgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactg |
33398887 |
T |
|
| Q |
653 |
attgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtc |
752 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||||||||| || | || |||||| || ||| ||| |||||| || |
|
|
| T |
33398888 |
attgttgatccaacttggtatttcacttcctggaataacaatttg------------------agaggtggattgtggattggccagaatgaattgtatc |
33398969 |
T |
|
| Q |
753 |
atccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttct |
852 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||| || |||||||| |||| | | || | |||| |
|
|
| T |
33398970 |
atccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctgaaatcc------agtcatcgtcattct |
33399063 |
T |
|
| Q |
853 |
cacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|| | |||||||||||||||||| | |||||||||||||| ||||||| ||| |||||||| || ||||||||||||||| |
|
|
| T |
33399064 |
catctcgttcccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatat |
33399146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 33358496 - 33358571
Alignment:
| Q |
418 |
ggaagtagattatccataggtgacttgatttggtcgtaacaagacctccattgagaatgactggaacactcatttt |
493 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33358496 |
ggaagtagattatccacaggtgacttgatttgggcgtaataagacctccattgagaattactggaacactcatttt |
33358571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 846 - 935
Target Start/End: Original strand, 33285621 - 33285710
Alignment:
| Q |
846 |
ttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| || ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
33285621 |
ttgttctcacgatgatcctccccaatattggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctccaaatttaaatat |
33285710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 33056931 - 33057071
Alignment:
| Q |
208 |
gttgtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtag |
307 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||| |||||| || ||||| ||| |||||||||| |||||| || ||| || ||||||||||||| |
|
|
| T |
33056931 |
gttgcggttctggttgtgtctcatcttcaattgtcaaaattttgcactttggagttaaggaatttttgtgattcatgatt---aaattgaattcttgtat |
33057027 |
T |
|
| Q |
308 |
gtcttgtttacatacccaacgatacccgcaactcttcacctcca |
351 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
33057028 |
atcttgtttacatacccaacgataaccgcaactctcgacctcca |
33057071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 624 - 826
Target Start/End: Original strand, 33271582 - 33271781
Alignment:
| Q |
624 |
tctattagtattgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtagg |
723 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||| | || ||| || | |
|
|
| T |
33271582 |
tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaa---------taag |
33271672 |
T |
|
| Q |
724 |
tttgtgggtttgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcac------ccagttttggacagttgaaaacgat |
817 |
Q |
| |
|
||| ||||||||| |||| |||||| |||||||||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||| || |
|
|
| T |
33271673 |
attgcgggtttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgac |
33271772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 208 - 349
Target Start/End: Original strand, 33358284 - 33358424
Alignment:
| Q |
208 |
gttgtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtag |
307 |
Q |
| |
|
|||| ||||| ||||| ||| ||||||||||||||||||||| || ||| | ||| |||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
33358284 |
gttgcggttgcggttgcgtctaatcttcaattgccaaaatcttgcatttcccagttaagagattttcgtgattcatcattgtgaagttgaactcttgtag |
33358383 |
T |
|
| Q |
308 |
gtcttgtttacatacccaacgatacccgcaactcttcacctc |
349 |
Q |
| |
|
|||||||||| | |||||||||||| | |||||||||||||| |
|
|
| T |
33358384 |
gtcttgttta-aaacccaacgatactcacaactcttcacctc |
33358424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 659 - 780
Target Start/End: Original strand, 33358714 - 33358839
Alignment:
| Q |
659 |
gatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgcc----ttaataaattgtgtcat |
754 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| |||||||| ||| ||||||| ||||||||| | ||||||||||| | ||| |||||| |||| |
|
|
| T |
33358714 |
gatccaacttagcatttcacttcctggagtaactatttgaatgctatgaaaatagtcagggtaggatggtgggtttgccagaatgaatgaattgtttcat |
33358813 |
T |
|
| Q |
755 |
ccatgaaaatgtcatgctactgcaac |
780 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
33358814 |
ccatgaaagtgtcatgctactgcaac |
33358839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 454
Target Start/End: Complemental strand, 31563378 - 31563224
Alignment:
| Q |
300 |
tcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaatt |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||| |||| || | || ||||||||||||| ||| |||| ||||| |
|
|
| T |
31563378 |
tcttgtaggtcatgtttacatacccaacgatatccgcaactcttcaccctcataggtgaaattttagccgaaaaaatgtcaaaatggatttttcgaaatt |
31563279 |
T |
|
| Q |
400 |
catccgaggactctcgtgggaagtagattatccataggtgacttgatttggtcgt |
454 |
Q |
| |
|
||| ||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31563278 |
catgacgtgaccctcgagggaagtagattatccataggtgacttgatttggtcgt |
31563224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 861 - 935
Target Start/End: Original strand, 33358885 - 33358959
Alignment:
| Q |
861 |
tcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
33358885 |
tcccacccaatagtggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgttccaaatttaaatat |
33358959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 33057135 - 33057188
Alignment:
| Q |
409 |
actctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaagac |
462 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33057135 |
actctcggggtaagtagataatccataggtgacttgatttggtcgtaacaagac |
33057188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 560 - 616
Target Start/End: Original strand, 33358656 - 33358712
Alignment:
| Q |
560 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataatagg |
616 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
33358656 |
aaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaatagg |
33358712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 869 - 935
Target Start/End: Original strand, 33304510 - 33304576
Alignment:
| Q |
869 |
aatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||| ||| ||| ||||||||| ||||||||||||| |
|
|
| T |
33304510 |
aatattggtaggagaaggaagttgaggcaaagattccaacaacatgcaatgctgcaaatttaaatat |
33304576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 858 - 935
Target Start/End: Original strand, 33271840 - 33271917
Alignment:
| Q |
858 |
tgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| |||| ||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
33271840 |
tgatcccgcccactagtaggtggagaaggaagtcgaggcaaagattccaacaacttgcaatgttccaaatttaaatat |
33271917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 871 - 935
Target Start/End: Original strand, 33410033 - 33410097
Alignment:
| Q |
871 |
tagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||| ||| ||||||||||||| ||||| ||||||| |
|
|
| T |
33410033 |
tagtggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatctaaatat |
33410097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 406 - 461
Target Start/End: Original strand, 33409535 - 33409590
Alignment:
| Q |
406 |
aggactctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaaga |
461 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||||||||| |||| |||| |
|
|
| T |
33409535 |
aggactctcgggggaagtagactagccataggtgacttgatttggttgtaataaga |
33409590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 31563444 - 31563382
Alignment:
| Q |
214 |
gttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgt |
276 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||||| || ||||||| ||| ||| |
|
|
| T |
31563444 |
gttgtggttgtgtctcatcttcaattgccaaattctttcacttccgagccaaggattttccgt |
31563382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 471
Target Start/End: Original strand, 33398653 - 33398718
Alignment:
| Q |
406 |
aggactctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaagacctccattga |
471 |
Q |
| |
|
|||| ||||| |||| |||| |||||||||||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
33398653 |
aggaatctcgggggatgtaggctatccataggtgacttgattcggtcgtaacaagatctctattga |
33398718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 28870617 - 28870565
Alignment:
| Q |
409 |
actctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaaga |
461 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
28870617 |
actctcgggggaagtagactagtcataggtgacttgatttggtcgtaataaga |
28870565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 6e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 45 - 489
Target Start/End: Complemental strand, 17441680 - 17441257
Alignment:
| Q |
45 |
aaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttgaatttt |
144 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||| |||| ||| | ||||||||||||||||| ||| |
|
|
| T |
17441680 |
aaagttaacaagatttttttgaattatcttccgtacctttgcttgttgttgacaacagagattgttgttgcagttgatttgttatcacttgttgacttt- |
17441582 |
T |
|
| Q |
145 |
ttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatcttcaattgccaa |
244 |
Q |
| |
|
||||| ||| | |||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
17441581 |
--------------------cttctttgtgaagtagttatgacttgtgagatgaatgattcttgttctggttgtg------tctcatcttcaattgccaa |
17441508 |
T |
|
| Q |
245 |
aatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttc |
344 |
Q |
| |
|
|||||| |||||| || |||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17441507 |
aatcttgcacttctgagccaaggttttttcgtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttc |
17441408 |
T |
|
| Q |
345 |
acctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggtgacttg |
444 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||||||| ||| | || |||| ||| ||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
17441407 |
acctccatacccaaagcttgcccctcaaaaatttcaaaacggatttctcgaaatgcatgataggactcacagtggaagtagattatccatatgtgacttg |
17441308 |
T |
|
| Q |
445 |
atttgg------tcgtaacaagacctccattgagaatgactggaacactca |
489 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
17441307 |
atttggttgttatcgtaacaagacttccattgagaattaccggaacactca |
17441257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 544 - 826
Target Start/End: Complemental strand, 17441163 - 17440899
Alignment:
| Q |
544 |
gatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacc |
643 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||| ||||||| |||||||||||| |
|
|
| T |
17441163 |
gatgaggtgccatggaaaatactgcacaacatacaaaaccaatgatattattgt------catgcttaataggagattggtctattcttattgaatcacc |
17441070 |
T |
|
| Q |
644 |
catgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaata |
743 |
Q |
| |
|
|| ||||| ||||||||||||||| |||||||| ||||||| | ||||||| |||||| ||| |||||| ||||| |||||||||| |
|
|
| T |
17441069 |
cacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatatgaatcctattcaaatagaaagggt------------ttgccttaatg |
17440982 |
T |
|
| Q |
744 |
aattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt |
826 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||| | || ||||||||| |
|
|
| T |
17440981 |
aattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttgaagatgaacaatcctgt |
17440899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 17447048 - 17446954
Alignment:
| Q |
231 |
tcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacataccca |
325 |
Q |
| |
|
||||||||| | |||||||| |||||| || ||||||||||||||| ||| | ||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17447048 |
tcttcaatttcaaaaatcttgcacttctgagccaaggaattttcgttattcaacattgttaagttgaactcttgtaggtcttgtttacataccca |
17446954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 861 - 935
Target Start/End: Complemental strand, 17440870 - 17440796
Alignment:
| Q |
861 |
tcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||||||| |||| |||| || ||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
17440870 |
tcccgcccgatagcggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatttaaatat |
17440796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 150; Significance: 8e-79; HSPs: 2)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 560 - 935
Target Start/End: Original strand, 367 - 739
Alignment:
| Q |
560 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
659 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||||||| |||| ||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
367 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
466 |
T |
|
| Q |
660 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
759 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||| | || ||||| | | ||||| |||| ||||||||| ||| |||||| ||||||||| |
|
|
| T |
467 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
566 |
T |
|
| Q |
760 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctcacgatg |
859 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||||| | |||| | | | | ||||||||| ||| |
|
|
| T |
567 |
aaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcctttagtcca---ataatattcgttgttctcatgata |
663 |
T |
|
| Q |
860 |
atcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||| ||||||||||| | || ||||||||||||| || |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
664 |
atccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatat |
739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 212 - 357
Target Start/End: Original strand, 1 - 146
Alignment:
| Q |
212 |
tggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtct |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||| ||||| ||||| ||||||| ||||||||| ||||||| || | |
|
|
| T |
1 |
tggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttt |
100 |
T |
|
| Q |
312 |
tgtttacatacccaacgatacccgcaactcttcacctccataccca |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
101 |
tgtttacatacccaacgatacccgcaacacttcacatccataccca |
146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 150; Significance: 8e-79; HSPs: 4)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 560 - 935
Target Start/End: Original strand, 6113 - 6485
Alignment:
| Q |
560 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
659 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||||||| |||| ||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6113 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
6212 |
T |
|
| Q |
660 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
759 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||| | || ||||| | | ||||| |||| ||||||||| ||| |||||| ||||||||| |
|
|
| T |
6213 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
6312 |
T |
|
| Q |
760 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctcacgatg |
859 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||||| | |||| | | | | ||||||||| ||| |
|
|
| T |
6313 |
aaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcctttagtcca---ataatattcgttgttctcatgata |
6409 |
T |
|
| Q |
860 |
atcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
|||| ||||||||||| | || ||||||||||||| || |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
6410 |
atccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatat |
6485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 65 - 357
Target Start/End: Original strand, 5615 - 5892
Alignment:
| Q |
65 |
gaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttgaattttttgtgatccatctgttgttt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
5615 |
gaattatcttcagtacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatcacttgttgacttt--------------------- |
5693 |
T |
|
| Q |
165 |
cttctcggtgtactagttatgacttgtgacatgaatgattcttgtt------gtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcg |
258 |
Q |
| |
|
|||||| ||| | |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
5694 |
cttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcg |
5793 |
T |
|
| Q |
259 |
gatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctccataccca |
357 |
Q |
| |
|
| ||||||| ||||| ||||| ||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
5794 |
aagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttttgtttacatacccaacgatacccgcaacacttcacatccataccca |
5892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 12108 - 12010
Alignment:
| Q |
41 |
atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga |
139 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
12108 |
atataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga |
12010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 13161 - 13018
Alignment:
| Q |
214 |
gttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttg |
313 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |||||| || |||||||| ||| ||||| || |||| ||| |||| |||||||||||||| |
|
|
| T |
13161 |
gttgcggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttg |
13062 |
T |
|
| Q |
314 |
tttacatacccaacgatacccgcaactcttcacctccataccca |
357 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||| |||||| |
|
|
| T |
13061 |
tttacatattcaacgatgcacgcaactcttcacctccgtaccca |
13018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 6e-49; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 560 - 826
Target Start/End: Complemental strand, 31472835 - 31472566
Alignment:
| Q |
560 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
659 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||||||||||||||||||||||| || || ||||| | |||| ||||||||| || ||||||||||| |
|
|
| T |
31472835 |
aaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttg |
31472736 |
T |
|
| Q |
660 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
759 |
Q |
| |
|
| |||||| |||||||||||||||| ||||||||| ||||| ||||| || || ||||| ||| |||||| ||||||| ||| | |||| ||||||||| |
|
|
| T |
31472735 |
aaccaacttggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatccatg |
31472636 |
T |
|
| Q |
760 |
aaaatgtcatgctactgcaaca---ctccctatcacccagttttggacagttgaaaacgatcaatcctgt |
826 |
Q |
| |
|
||||||||||| || ||||||| ||||| ||||||| || ||||||||||||| || ||||||||| |
|
|
| T |
31472635 |
aaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaatcctgt |
31472566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 560 - 824
Target Start/End: Complemental strand, 31479293 - 31479029
Alignment:
| Q |
560 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
659 |
Q |
| |
|
||||||| ||||||||| | |||||| |||||||||||||||||| |||||||| || | |||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
31479293 |
aaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttg |
31479194 |
T |
|
| Q |
660 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
759 |
Q |
| |
|
| |||||| || |||||||| |||| |||||||||||||| | ||||| | || || || || |||| ||||||||| ||| |||||| ||||||||| |
|
|
| T |
31479193 |
aaccaacttggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatccatg |
31479094 |
T |
|
| Q |
760 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
824 |
Q |
| |
|
|||||||||||||||| |||| ||| | ||||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
31479093 |
aaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaatcct |
31479029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 544 - 701
Target Start/End: Complemental strand, 31499356 - 31499199
Alignment:
| Q |
544 |
gatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacc |
643 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || || ||||||| ||||||||||||| |
|
|
| T |
31499356 |
gatgaggtgccatagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacc |
31499257 |
T |
|
| Q |
644 |
catgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatc |
701 |
Q |
| |
|
| |||||||||| || | |||||| | |||||||||||||| ||||||||| |||||| |
|
|
| T |
31499256 |
cttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc |
31499199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 547 - 813
Target Start/End: Complemental strand, 31504485 - 31504225
Alignment:
| Q |
547 |
gaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccat |
646 |
Q |
| |
|
|||||||||| | ||||||| ||||||||| | | |||||||||||||| ||| ||||||||||| | || ||||||| |||| || |||| | |
|
|
| T |
31504485 |
gaggttccatggaaaatactacacaacatacacaaccaatgatattatttttaaagtcatgcataagac-ca----gtctatttgtatggagcgaccctt |
31504391 |
T |
|
| Q |
647 |
gctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaat |
746 |
Q |
| |
|
||||| |||||||| |||||| ||||||||| |||| | |||||| ||| ||||| || ||| ||| | | ||| |||||||||||||||||| ||| |
|
|
| T |
31504390 |
gctctaattgttgaaccaacttggtatttcatttccaggagtaacgatt-gaatcacatgaaagtagtcggatgaggattgtgggtttgccttaatgaat |
31504292 |
T |
|
| Q |
747 |
tgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa |
813 |
Q |
| |
|
||| ||||||||||||||||||| ||| || | || ||||| ||| ||| ||| ||||||||||||| |
|
|
| T |
31504291 |
tgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaa |
31504225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 646 - 813
Target Start/End: Original strand, 31148106 - 31148264
Alignment:
| Q |
646 |
tgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaa |
745 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| | |||||||||||||||| || ||| ||| ||||||||| ||| ||| | |
|
|
| T |
31148106 |
tgctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacat---------cagatgaggattgtgggttcgcccgaatgag |
31148196 |
T |
|
| Q |
746 |
ttgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa |
813 |
Q |
| |
|
|||| |||||||||||||| |||||||| | ||||| ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
31148197 |
ttgtatcatccatgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaa |
31148264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 632 - 824
Target Start/End: Original strand, 31157018 - 31157213
Alignment:
| Q |
632 |
tattgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggc---agggtaggtttgt |
728 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| | |||||||||||||| | | ||||||||| ||| | || ||||| || | ||| |||| |
|
|
| T |
31157018 |
tattgaatcaccctcgctctgattgttgaaccaaattggtatttcacttccaggaataacaattttaatgatgtcttcataggagaaagtggagggttgt |
31157117 |
T |
|
| Q |
729 |
gggtttgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
824 |
Q |
| |
|
| |||||| ||| |||||| ||||||||||||||| ||||||| ||||| || || ||||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
31157118 |
tgtcttgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaatcct |
31157213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 31479640 - 31479558
Alignment:
| Q |
264 |
aaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcac |
346 |
Q |
| |
|
||||||||| |||||| ||| ||| |||||||||||||||||| || |||||| | |||||||| ||||| ||| ||||||| |
|
|
| T |
31479640 |
aaggaatttctgtgattcatctttgttaagttgaattcttgtagatcctgtttataaacccaacggtacccacaattcttcac |
31479558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 31485354 - 31485293
Alignment:
| Q |
290 |
taagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctcca |
351 |
Q |
| |
|
||||||||| ||||| || || || ||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
31485354 |
taagttgaactcttgcagatcctgcttaaatacccaacgatacccgcaactcttcacttcca |
31485293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 883 - 935
Target Start/End: Original strand, 31157257 - 31157309
Alignment:
| Q |
883 |
aaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatat |
935 |
Q |
| |
|
||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||| |
|
|
| T |
31157257 |
aaggaagttgaggcaaagattccaaaagcttgcaatgctccaagtttaaatat |
31157309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 936
Target Start/End: Original strand, 31148343 - 31148396
Alignment:
| Q |
883 |
aaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatg |
936 |
Q |
| |
|
||||||||||||| || |||||||| ||||| ||||||| ||| |||||||||| |
|
|
| T |
31148343 |
aaggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatg |
31148396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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