View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_high_16 (Length: 502)

Name: NF16931_high_16
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_high_16
NF16931_high_16
[»] chr2 (6 HSPs)
chr2 (18-354)||(1529629-1529965)
chr2 (444-490)||(1529489-1529535)
chr2 (220-291)||(16567724-16567795)
chr2 (214-292)||(24448004-24448082)
chr2 (216-293)||(7670403-7670480)
chr2 (233-310)||(40626512-40626589)
[»] chr4 (6 HSPs)
chr4 (218-350)||(26635214-26635348)
chr4 (215-292)||(22202951-22203028)
chr4 (214-322)||(34666433-34666541)
chr4 (198-254)||(26183662-26183718)
chr4 (257-306)||(2183362-2183411)
chr4 (257-309)||(45413766-45413818)
[»] chr7 (5 HSPs)
chr7 (215-293)||(10026462-10026540)
chr7 (214-306)||(41482419-41482511)
chr7 (216-315)||(24429716-24429815)
chr7 (234-293)||(39644948-39645007)
chr7 (234-300)||(45884647-45884712)
[»] chr8 (6 HSPs)
chr8 (215-300)||(32889976-32890061)
chr8 (215-293)||(7547882-7547960)
chr8 (122-189)||(22573080-22573150)
chr8 (214-314)||(22573159-22573259)
chr8 (220-314)||(9028625-9028719)
chr8 (214-276)||(40028846-40028908)
[»] chr3 (1 HSPs)
chr3 (257-312)||(45850748-45850803)
[»] chr1 (4 HSPs)
chr1 (220-315)||(26793787-26793882)
chr1 (234-310)||(9383222-9383298)
chr1 (216-293)||(45792690-45792767)
chr1 (257-309)||(6768329-6768381)
[»] chr5 (2 HSPs)
chr5 (216-293)||(13109735-13109812)
chr5 (214-293)||(13039739-13039818)
[»] chr6 (1 HSPs)
chr6 (269-322)||(16342697-16342750)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 1529965 - 1529629
Alignment:
Q  18 aatttatggcaaaaatctcactcaaaagtttcgagatgttggtacattcccatatgttactgtaccgcttcacaatgggagaatatattaaaccttaacg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1529965 aatttatggcaaaaatctcactcaaaagtttcgagatgttggtacattcccatatgttactgtaccgcttcacaatgggagaatatattaaaccttaaca 1529866  T
Q  118 gcatgtttggtgcgcatgataacgggacaggatatgattggattatatcctgactcaatccgctgtttggtgtactaaccgtttgatgtactaaccggaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529865 gcatgtttggtgcgcatgataacgggacaggatatgattagattatatcctgactcaatccgctgtttggtgtactaaccgtttgatgtactaaccggaa 1529766  T
Q  218 atgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaactatta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529765 atgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaactatta 1529666  T
Q  318 agcgcatcgtctattcctagtaaaaccttcgacaccc 354  Q
    |||||||||||||||||||||||||||||||||||||    
T  1529665 agcgcatcgtctattcctagtaaaaccttcgacaccc 1529629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 1529535 - 1529489
Alignment:
Q  444 cctgtagcataaattacaaacgtgatatcttcccaatggatattctt 490  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  1529535 cctgtagcataaattacaaacgtgatatcttcccaatggattttctt 1529489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 16567795 - 16567724
Alignment:
Q  220 gataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggtt 291  Q
    |||||||||||| ||||| ||||| ||||  |||||||||||||| ||||||||| |  |||||||||||||    
T  16567795 gataagtttaacctatttctaatcctatctcactcctcctttgttattcttatccatagtttttggtgggtt 16567724  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 24448004 - 24448082
Alignment:
Q  214 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggtta 292  Q
    |||||||||||||||||  ||||| ||||| | |||||| ||||||||| | || | |||||| |||||||||||||||    
T  24448004 ggaaatgataagtttaatctatttgtaatcctgtcctacccctcctttgatattttaatcctttatttttggtgggtta 24448082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 7670403 - 7670480
Alignment:
Q  216 aaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 293  Q
    |||||||||||||||| | ||| ||||| ||||||| |   | |||||  ||||||||||| ||||||||||||||||    
T  7670403 aaatgataagtttaacctgtttctaatcctatcctattgagcttttgtaattcttatccttaatttttggtgggttag 7670480  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 40626512 - 40626589
Alignment:
Q  233 tatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaa 310  Q
    ||||| ||||| ||||||||||  ||||| || || |||||||| | ||||||||||||| ||| ||| |||||||||    
T  40626512 tatttctaatcctatcctactcaccctttattatttttatccttaaattttggtgggttaacaacctgatagcataaa 40626589  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 350
Target Start/End: Complemental strand, 26635348 - 26635214
Alignment:
Q  218 atgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaactatta 317  Q
    ||||||| |||||| |||||  |||  ||||||||||||||||| || |||||||||||  |||||||||||||||||| ||| ||||| |||||||| |    
T  26635348 atgataaatttaacctatttccaattctatcctactcctcctttattattcttatccttagtttttggtgggttagcaacctgatagcacaaaactatca 26635249  T
Q  318 a--gcgcatcgtctattcctagtaaaaccttcgac 350  Q
    |  |||| || ||||||||||||||||||||||||    
T  26635248 agcgcgcctcctctattcctagtaaaaccttcgac 26635214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 22202951 - 22203028
Alignment:
Q  215 gaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggtta 292  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| |||||| || | |||||| | |||||||||||||    
T  22202951 gaaatgataagtttaacctatttttaatcctatcctacccctcttttgttattttaatcctttacttttggtgggtta 22203028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 34666433 - 34666541
Alignment:
Q  214 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaact 313  Q
    ||||||||||| || ||| ||||| ||||||||||||| |||  |||| || || |||||| | | |||| |||||||||||| ||| ||||||||| ||    
T  34666433 ggaaatgataacttaaacctatttctaatcatatcctattccctctttcttatttttatccgtaactttttgtgggttagcaacctgatagcataaagct 34666532  T
Q  314 attaagcgc 322  Q
    || ||||||    
T  34666533 atcaagcgc 34666541  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 26183662 - 26183718
Alignment:
Q  198 gtttgatgtactaaccggaaatgataagtttaacttatttttaatcatatcctactc 254  Q
    |||||||| || ||| |||||||||||||||||| ||||| ||||| ||||||||||    
T  26183662 gtttgatgcaccaacaggaaatgataagtttaacatatttctaatcctatcctactc 26183718  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 2183362 - 2183411
Alignment:
Q  257 cctttgttgttcttatccttgatttttggtgggttagcaatctggtagca 306  Q
    |||||||| || |||||||| ||||||||||||||||||| ||| |||||    
T  2183362 cctttgttatttttatccttaatttttggtgggttagcaacctgatagca 2183411  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 45413818 - 45413766
Alignment:
Q  257 cctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataa 309  Q
    |||||||| || ||||||||  |||||||||||||||||| ||| ||||||||    
T  45413818 cctttgttatttttatccttagtttttggtgggttagcaacctgatagcataa 45413766  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 10026462 - 10026540
Alignment:
Q  215 gaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 293  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||  |||||||||| ||||    
T  10026462 gaaatgataagtttaacctatttctaatcatatcccactcctcctttgttattcttatccttagtttttggtggattag 10026540  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 41482511 - 41482419
Alignment:
Q  214 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagca 306  Q
    ||||| ||||| || ||| ||||||||||||||||||||||  |||||||| || ||||||||  |||||||||||||||||| ||| |||||    
T  41482511 ggaaaggataacttaaacctatttttaatcatatcctactcaccctttgttatttttatccttagtttttggtgggttagcaacctgatagca 41482419  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 24429716 - 24429815
Alignment:
Q  216 aaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaactat 315  Q
    ||||||||| || ||  ||||| ||||| |||| |||||  |||||||| || ||||||||  |||||||||||||||||| ||| ||||||||| ||||    
T  24429716 aaatgataatttaaaactatttataatcctatcttactcaccctttgttatttttatccttagtttttggtgggttagcaacctgatagcataaagctat 24429815  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 39644948 - 39645007
Alignment:
Q  234 atttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 293  Q
    |||| ||||| |||||||||| ||||||||| || ||||||||  |||||||||||||||    
T  39644948 atttataatcctatcctactcatcctttgttatttttatccttagtttttggtgggttag 39645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 45884712 - 45884647
Alignment:
Q  234 atttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctg 300  Q
    ||||||||||||||||||||||| ||||||| || |||||||   ||||||| |||||| |||||||    
T  45884712 atttttaatcatatcctactcct-ctttgttatttttatcctaagtttttggcgggttaacaatctg 45884647  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 32889976 - 32890061
Alignment:
Q  215 gaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctg 300  Q
    ||||||||||||||||| ||||| ||||| ||||| ||| ||||||||||||| ||||||||   |||||||||||||| ||||||    
T  32889976 gaaatgataagtttaacctatttctaatcctatcccacttctcctttgttgtttttatccttagattttggtgggttagaaatctg 32890061  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 7547882 - 7547960
Alignment:
Q  215 gaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 293  Q
    ||||||||||||||||| ||||||| ||| ||||| ||| |||||||| | || ||||||||  |||||||||||||||    
T  7547882 gaaatgataagtttaacctattttttatcctatcccacttctcctttgatattattatccttagtttttggtgggttag 7547960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 22573080 - 22573150
Alignment:
Q  122 gtttggtgcgcatgataacgggacaggatatgattggatta---tatcctgactcaatccgctgtttggtg 189  Q
    |||||||||||||||||| | |||| ||||||||| || ||   ||||||||||||||||| |||||||||    
T  22573080 gtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtg 22573150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 22573159 - 22573259
Alignment:
Q  214 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaact 313  Q
    |||||||||||||||||| | ||| ||||| ||||||| |   |||||||  |||||||||||  |||||||||||||| |||  || ||| ||||||||    
T  22573159 ggaaatgataagtttaacctgtttctaatcctatcctattgaacctttgtaattcttatccttagtttttggtgggttaacaacatgataggataaaact 22573258  T
Q  314 a 314  Q
    |    
T  22573259 a 22573259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 9028719 - 9028625
Alignment:
Q  220 gataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaacta 314  Q
    ||||| || ||| ||||||||||| ||||||| |   |||||||  |||||||||||| |||||| ||||||||||| ||| ||| ||| |||||    
T  9028719 gataatttaaacctatttttaatcctatcctattgaacctttgtaattcttatccttggtttttgatgggttagcaacctgataggatataacta 9028625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 40028846 - 40028908
Alignment:
Q  214 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatcctt 276  Q
    ||||||||||| |||||| | ||| |||||  ||||||||||||||||||| || ||||||||    
T  40028846 ggaaatgataactttaacctttttctaatctcatcctactcctcctttgttatttttatcctt 40028908  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 45850803 - 45850748
Alignment:
Q  257 cctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaac 312  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||    
T  45850803 cctttgttattcttatccttgatttttggtgggttagcaacctgatagcataaaac 45850748  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 26793787 - 26793882
Alignment:
Q  220 gataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaaactat 315  Q
    ||||| || ||||||||| ||||| ||||||| ||  |||||||| || |||| |||  |||||||||||||||||| ||| ||||||||||||||    
T  26793787 gataacttaaacttatttctaatcctatcctaatcaacctttgttatttttattcttagtttttggtgggttagcaacctgatagcataaaactat 26793882  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 9383298 - 9383222
Alignment:
Q  234 atttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataaa 310  Q
    |||| ||||| ||||||||||  |||||||| || | |||||| ||||||| ||||||||||| ||| |||||||||    
T  9383298 atttctaatcttatcctactcaccctttgttattttcatccttaatttttgatgggttagcaacctgatagcataaa 9383222  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 45792767 - 45792690
Alignment:
Q  216 aaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 293  Q
    |||||||||||||||| | ||| ||||| ||||||| |   |||||||  |||||||||||  |||||||||||||||    
T  45792767 aaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 45792690  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 6768329 - 6768381
Alignment:
Q  257 cctttgttgttcttatccttgatttttggtgggttagcaatctggtagcataa 309  Q
    |||||||| || |||||||| |||||||||||||||| || ||| ||||||||    
T  6768329 cctttgttatttttatccttaatttttggtgggttaggaacctgatagcataa 6768381  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 13109735 - 13109812
Alignment:
Q  216 aaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 293  Q
    |||||||||||||||| ||||| |||||||||||||  |  |||||||| || ||||||||  |||||||||||||||    
T  13109735 aaatgataagtttaacatatttctaatcatatcctatccaccctttgttatttttatccttagtttttggtgggttag 13109812  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 13039739 - 13039818
Alignment:
Q  214 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 293  Q
    |||||||||||||||||| ||||| |||| ||||||||  | |||||| || || ||||||||  |||||||||||||||    
T  13039739 ggaaatgataagtttaacatatttctaattatatcctatccatcctttattatttttatccttagtttttggtgggttag 13039818  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 16342750 - 16342697
Alignment:
Q  269 ttatccttgatttttggtgggttagcaatctggtagcataaaactattaagcgc 322  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| |||| ||||||    
T  16342750 ttatccttaatttttggtgggttagcaacctgatagcataaatctatcaagcgc 16342697  T

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