View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_high_18 (Length: 493)
Name: NF16931_high_18
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33882106 - 33882404
Alignment:
| Q |
1 |
caactctagaacgcttaaaagaaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacctaatgaaac |
100 |
Q |
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| T |
33882106 |
caactctagaacgcttagaagaaactctcgaatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttgaaccgatcacctaatgaaac |
33882205 |
T |
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| Q |
101 |
gaagagaataatcaaacaaatgaaagatggaaaagaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagca |
200 |
Q |
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| T |
33882206 |
aaagagaataatcaaacaaatgaaagatggaaaagaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttggtacaaaaaagca |
33882305 |
T |
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| Q |
201 |
cagtatcaagaacagcttgaatcattggatgaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattggaaacacat |
299 |
Q |
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| T |
33882306 |
cagtatcaagaagaacttgaagcattggatgaaaagattaaaagattctttgatcttgatttgatagctcaaattgcaaggactggattggaaacacat |
33882404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 31 - 450
Target Start/End: Original strand, 33866317 - 33866739
Alignment:
| Q |
31 |
aatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacctaatgaaacgaagagaataatcaaacaaatgaaagatgg |
130 |
Q |
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| T |
33866317 |
aatcattaggaccattgatcaatcaaatagatgaactcaagaagaaattggatcattcacccaatgaaacaaaaacactgatcaaacaaatgaaagatgg |
33866416 |
T |
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| Q |
131 |
aaaagaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaacagcttgaatcattggat |
230 |
Q |
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| T |
33866417 |
aaaagaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaacaacttgaagcattggat |
33866516 |
T |
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| Q |
231 |
gaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattggaaacacatttggagattaaagagtttcgtgctgaaattc |
330 |
Q |
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| T |
33866517 |
gaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgactggattggaaacacttttggagattaaagagtttcgtgctgaattta |
33866616 |
T |
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| Q |
331 |
g-aag--tattcttgtgaggaatgaaaggattgaatt-agagaatatttgtcggcctcctgaaccacctggttttattgttgggttggatgagactttca |
426 |
Q |
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| T |
33866617 |
gtaaggctaatgttgggagaagtgaaagagttgaattaagag-gtgtttgtttgccacctcaaccacctggttttattgttgggttggatggtcctttga |
33866715 |
T |
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| Q |
427 |
ataagttgaaggagatattgttga |
450 |
Q |
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| T |
33866716 |
atgagttgaagatgagattgttga |
33866739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 320 - 477
Target Start/End: Original strand, 33882446 - 33882609
Alignment:
| Q |
320 |
tgctgaaattcgaagtattcttgtgaggaatgaaaggattga------attagagaatatttgtcggcctcctgaaccacctggttttattgttgggttg |
413 |
Q |
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| T |
33882446 |
tgctgaaattcgaagtgttcttgtgaggactgaaaggattgaatttgaattagagaatatttgtcggcctcctaaaccacctggttttattgttgggtcg |
33882545 |
T |
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| Q |
414 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctg |
477 |
Q |
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| T |
33882546 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctg |
33882609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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