View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_high_23 (Length: 423)
Name: NF16931_high_23
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 38339775 - 38339385
Alignment:
| Q |
16 |
agagataagtaggctccaatggtccagtcctgttcattgaggtctgaccaaaatcacttgtatctccaacatttgtctttgcaatggtttatcnnnnnnn |
115 |
Q |
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| T |
38339775 |
agagataaggaggctccagtggtccagtcttgttcattgaggtctgaccctaatcacttgtatctccaacatttgtctttgcaatagtttatcaaaataa |
38339676 |
T |
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| Q |
116 |
nnnnnnnnnnnnnnnggcctaatgattatgatcttaccgtgaaatcaattccaggatgatctgagctccaaaatatatcatggtccatgacaacaaaatt |
215 |
Q |
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| T |
38339675 |
aaataaaaataataaggcctaatgattatgatcttaccgtgaaatcaattccaggatgatctgagctccaaaatatatcatggtccatgacaacaaaatt |
38339576 |
T |
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| Q |
216 |
tccagaaatggtgtcaccgccatgttccacatactctgatacacattcaacatcgtgtaaactgattgagagagcaattacgtgacaaattgtggtaccc |
315 |
Q |
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| T |
38339575 |
tccagaaattgtatcaccgccatgttccacatactctgatacacattcaacatcgtgtaaactgattgagagagcaattacgtgacaaattgtggtacct |
38339476 |
T |
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| Q |
316 |
aagaaaattaacacaattgtacaaatctttgaaagccaatccatatttcccactttgttatgattgttaatgcctaattcactattaaatt |
406 |
Q |
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| T |
38339475 |
aagaaaattaacacaattgtacaaatctttgaaagccaatccatatttcccactttgttatgattgttaatgcctaattcactattaaatt |
38339385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 46427680 - 46427762
Alignment:
| Q |
148 |
cttaccgtgaaatcaattccaggatgatctgagctccaaaatatatcatggtccatgacaacaaaatttccagaaatggtgtc |
230 |
Q |
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| T |
46427680 |
cttaccgtgaaatcaatgccagggtgatcggaactccagaaaatatcatggtcaacgacaacaaaattccccgaaacggtgtc |
46427762 |
T |
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