View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16931_high_37 (Length: 311)
Name: NF16931_high_37
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 198259 - 197972
Alignment:
| Q |
1 |
gtcccaactctgcttccaaaagagaaaattgtgctgccagtgaattcaacccaaaaaacccatatttttattcaaaatccaacaggggcttttatgcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198259 |
gtcccaactctgcttccaaaagagaaaattgtgctgccagtgaattcaacccaaaaaacccatatttttattcaaaatccaacaggggcttttatgcagt |
198160 |
T |
|
| Q |
101 |
aaggattttaattactttctggtttttaaagttacggtatgatttatatttatggttccatttgcattgacctctcctccattgtgcagtatgttccttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
198159 |
aaggattttaattactttctggtttttaaagttacggtatgatttatatttatggttccatttgcattgacct---ctccattgtgcagtatgttccttc |
198063 |
T |
|
| Q |
201 |
tagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtattgcat |
291 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198062 |
tatttttgctgaaaagtatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgtgtattgcat |
197972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 203697 - 203979
Alignment:
| Q |
1 |
gtcccaactctgcttccaaaagagaaaattgtgctgccagtgaattcaacccaaaaaacccatatttttattcaaaatccaacaggggcttttatgcagt |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||| |||||| |||||||||||| || |||| ||| ||| || |
|
|
| T |
203697 |
gtcctaactctgattccaaaagagcaaattgtgctgtcggtgaattcaacccaaaaaacccttattttcattcaaaatccatcaagggcatttttgcggt |
203796 |
T |
|
| Q |
101 |
aaggattttaattac----tttctggtttttaaagttacggtatgatttatat--ttatggttccatttgcattgacctctcctccattgtgcagtatgt |
194 |
Q |
| |
|
||||||| | || | ||| ||||||||||||||| || ||| |||||| ||| ||| |||| |||||| |||| | |||| || ||||||| |
|
|
| T |
203797 |
gaggatttcactttctagttttttggtttttaaagttaatgtttgagttatatacttacggtgttgtttgaattgacttctcattcattctgtagtatgt |
203896 |
T |
|
| Q |
195 |
tccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagttt |
277 |
Q |
| |
|
||||||| |||||||| ||||| || ||| ||||| ||||||||||| ||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
203897 |
tccttctggttttgctaaaaagtatttgatgctaatggttccgttcatgctccaaaactatcaaggaaagtagtgcgaagttt |
203979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 225949 - 225835
Alignment:
| Q |
174 |
ctcctccattgtgcagtatgttccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaa |
273 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||| | ||||||||| || ||| |||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
225949 |
ctcctccattgtgtagtatgttcctggtgaatttgctaaggagcatctgaagccaaatgttccgttcatgctccaaaattatcaaggaaagcagtgggaa |
225850 |
T |
|
| Q |
274 |
gtttattgtgtattg |
288 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
225849 |
gtttcttgtgtattg |
225835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 211483 - 211383
Alignment:
| Q |
177 |
ctccattgtgcagtatgttccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtt |
276 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| | ||||||||| || ||| |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
211483 |
ctccattgtgtagtatgttcctggtgaatttgctaaggagcatctgaagccaaatgttccgttcatgctccaaaattctcaaaaaaagcagtgggaagtt |
211384 |
T |
|
| Q |
277 |
t |
277 |
Q |
| |
|
| |
|
|
| T |
211383 |
t |
211383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 216774 - 216662
Alignment:
| Q |
183 |
tgtgcagtatgttccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgt |
282 |
Q |
| |
|
||||||||||||| | || ||||||| ||||||||||| | ||| ||||| | ||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
216774 |
tgtgcagtatgttaatgctgattttgcttcaaagcatctgaatccaaatgttcctataaagctccaaaattctcacggaaagcagtgggaagtttcatgt |
216675 |
T |
|
| Q |
283 |
gtattgcatgatg |
295 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
216674 |
gcaatgcatgatg |
216662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6904788 - 6904501
Alignment:
| Q |
1 |
gtcccaactctgcttccaaaagagaaaattgtgctgccagtgaattcaacccaaaaaacccatatttttattcaaaatccaacaggggcttttatgcagt |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| || |||| ||| ||| || |
|
|
| T |
6904788 |
gtcctaactctgattccaaaagagcaaattgtgctgccggtgaattcaacccaaaaaacccttattttcattcaaaatccatcaagggcatttttgcggt |
6904689 |
T |
|
| Q |
101 |
aaggattttaattac----tttctggtttttaaagttacggtatga--tttatatttatggttccatttgcattgacctctcctccattgtgcagtatgt |
194 |
Q |
| |
|
||||||| | || | ||| ||||||||||||||| || ||| | | || ||| ||| |||| |||||| |||| | | || || ||||||| |
|
|
| T |
6904688 |
gaggatttcattttctagttttttggtttttaaagttaatgtttgaggtatttacttacggtgttgtttgaattgacttctcattctttctgtagtatgt |
6904589 |
T |
|
| Q |
195 |
tccttctagttttgctgaaaagcatctgacgctaaaggttccgttcaagctccaaaattctcaaggaaagcagtgggaagtttattgt |
282 |
Q |
| |
|
||||||| |||||||| ||||| || ||| ||||| ||||| ||||| ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
6904588 |
tccttctggttttgctaaaaagtatttgatgctaatggttctgttcatgctccaaaactatcaaggaaagcagtgggaagtttattgt |
6904501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 6903095 - 6903054
Alignment:
| Q |
244 |
ctccaaaattctcaaggaaagcagtgggaagtttattgtgta |
285 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
6903095 |
ctccaaaattctcaaggaaagcattggaaagttcattgtgta |
6903054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 6903305 - 6903260
Alignment:
| Q |
32 |
tgctgccagtgaattcaacccaaaaaacccatatttttattcaaaa |
77 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
6903305 |
tgctgccaatgaattcaatccaaaaaacccttatttttgttcaaaa |
6903260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University