View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_high_43 (Length: 275)
Name: NF16931_high_43
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 3674918 - 3674675
Alignment:
| Q |
20 |
aatggtagccgtagacgtctcactgatcaaatctcgtgtgttatttgtttgcgttttt-cttttgagccgaggttgatgttctaacataatacaaacagg |
118 |
Q |
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| T |
3674918 |
aatggtagccgtagacgtctcactgatcaaatctcgtgtgttatttgtttgcgttttttcttttgagccgaggttgatgttctaacataatacaaacagg |
3674819 |
T |
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| Q |
119 |
atactctgctactatgccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674818 |
atactctgctactatgccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatac |
3674719 |
T |
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| Q |
219 |
agagatttcaaagcttcaaatatcttactagactcggtatgttc |
262 |
Q |
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| T |
3674718 |
agagatttcaaagcttcaaatatcttactagactcggtatgttc |
3674675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 262
Target Start/End: Original strand, 48553545 - 48553699
Alignment:
| Q |
108 |
atacaaacaggatactctgctactatgccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaac |
207 |
Q |
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| T |
48553545 |
atacaatcaggatactctgctacattaccatggtcaaccagaatgaaaattgcattaggtgcagctaagggactagctttccttcatgaagcagataaac |
48553644 |
T |
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| Q |
208 |
ctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttc |
262 |
Q |
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| T |
48553645 |
ctgtaatttatagggatttcaaaacttcaaatatattactggactcggtatgttc |
48553699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 44196556 - 44196481
Alignment:
| Q |
189 |
cttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttcat |
264 |
Q |
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||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
44196556 |
cttcatgaagcagataaacttgtaatatatagggatttcaaaacttcaaatatattactggactcggtatgttcat |
44196481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 19965817 - 19965892
Alignment:
| Q |
189 |
cttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttcat |
264 |
Q |
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| T |
19965817 |
cttcatgaagcagataaacttgtaatatatagggatttcaaaaattcaaatatattactggactcggtatgttcat |
19965892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 18327607 - 18327485
Alignment:
| Q |
135 |
ccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagctt |
234 |
Q |
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|||||||||||||| |||||||| || | |||||||| ||||| ||||| |||||||||||||| || |||| || || | |||||||||||||||| |
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| T |
18327607 |
ccatggtcaacaagaatgaaaattgctgttggagctgcaaaaggtttagcctttcttcatgaagctgagcaaccagttatttttagagatttcaaagctt |
18327508 |
T |
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| Q |
235 |
caaatatcttactagactcggta |
257 |
Q |
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|||| ||||| ||||||||||| |
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| T |
18327507 |
caaacatcttgttagactcggta |
18327485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 51938791 - 51938673
Alignment:
| Q |
135 |
ccatggtcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagctt |
234 |
Q |
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|||||||||||||| |||||||| || | |||||||| ||||| |||| ||| | ||||| ||| | ||||| || || |||||||||||||||| || |
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| T |
51938791 |
ccatggtcaacaagaatgaaaattgctgttggagctgcaaaaggtctagcttttttacatgatgcaaagaaaccagtcatctacagagatttcaaaggtt |
51938692 |
T |
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| Q |
235 |
caaatatcttactagactc |
253 |
Q |
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||||||||||| ||||||| |
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| T |
51938691 |
caaatatcttattagactc |
51938673 |
T |
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