View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_high_45 (Length: 270)
Name: NF16931_high_45
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 39631691 - 39631938
Alignment:
| Q |
1 |
atgatcaacaaagtcatcgcattaacaatgattttgtattcaagtgaaatgttaatctatttttagcaattatacctaacnnnnnnnngttgcataaatt |
100 |
Q |
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| T |
39631691 |
atgatcaacaaagtcatcacattaacaatgattttgtattcaagtgaaatgttaatctatttttagcaattatacctaacttttttttgttgtataaatt |
39631790 |
T |
|
| Q |
101 |
gtaattttgttagtggattttgatagttgacattaaataaaataaagagcttaacatannnnnnncgctaataaaagcttaacatatttaatttaattta |
200 |
Q |
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| T |
39631791 |
gtaattttgttagtggattttgatagttgacattaaataaaataaagagcttaacatatttttttcgctaataaaagcttaacat-----atttaattta |
39631885 |
T |
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| Q |
201 |
atttacttgattatgtatgtcctaaatcctatctatattttgagaaaacaaag |
253 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39631886 |
atttacttgattatgtttgtcctaaatcctatctatattttgagaaaacaaag |
39631938 |
T |
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