View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16931_high_46 (Length: 261)
Name: NF16931_high_46
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 9678963 - 9679211
Alignment:
| Q |
1 |
acaaacatcgaagataaacaagtgatgcctgcatgtggaaaaagtttaaaagtaaaatagtttttgagctttatacaacaaattcgattccattcaagag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9678963 |
acaaacatcgaagagaaacaagtgatgcctgcatgtggaaaaagtttaaaagtaaaatagtttttgagctttatacaacaaattcgattccattcaagag |
9679062 |
T |
|
| Q |
101 |
ttctctagctcaacacaaaacgatattgggttattgacaagaaccagcccacatggtatagtatggactgggttcggttaatgtaactgtttcatgtagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9679063 |
ttctctagctcaacacaaaacgatattgggttattgacaagaaccagcccacatggtatagtatggactgggttcggttaatgtaattgtttcatgtagt |
9679162 |
T |
|
| Q |
201 |
atgtgatcttgatcgttaaaatctgatataacgattcttatttatttat |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9679163 |
atgtgatctcgatcgttaaaatctgatataacgattcttatttatttat |
9679211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University