View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_high_52 (Length: 238)
Name: NF16931_high_52
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 16263042 - 16263109
Alignment:
| Q |
154 |
aaatagttgtcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggcctgttt |
221 |
Q |
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| T |
16263042 |
aaatagttgtcatgttcagcaagcagcttcaattttcttgcaattgctttaccttcaggggcatgttt |
16263109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35347854 - 35347765
Alignment:
| Q |
1 |
aaacaaaaaaggaaagaacaatgtaaatgattcaccttgaaaaatcacctgtgcatgaaaaggtagcatgcagcgatataaaattgggat |
90 |
Q |
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| T |
35347854 |
aaacaaaaaagggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcagagacataaaattgggat |
35347765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2274912 - 2274823
Alignment:
| Q |
1 |
aaacaaaaaaggaaagaacaatgtaaatgattcaccttgaaaaatcacctgtgcatgaaaaggtagcatgcagcgatataaaattgggat |
90 |
Q |
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| T |
2274912 |
aaacaaaaaagggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcagagacataaaattgggat |
2274823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39346402 - 39346313
Alignment:
| Q |
1 |
aaacaaaaaaggaaagaacaatgtaaatgattcaccttgaaaaatcacctgtgcatgaaaaggtagcatgcagcgatataaaattgggat |
90 |
Q |
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| T |
39346402 |
aaacaaaaaagggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcagagacataaaattgggat |
39346313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4012246 - 4012157
Alignment:
| Q |
1 |
aaacaaaaaaggaaagaacaatgtaaatgattcaccttgaaaaatcacctgtgcatgaaaaggtagcatgcagcgatataaaattgggat |
90 |
Q |
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|||||||||||| |||||||||| || ||||||||||||||| ||||||| || ||| ||||||||||| || ||||||||||||| |
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| T |
4012246 |
aaacaaaaaagggaagaacaatgcaatagattcaccttgaaaagtcacctgcacacaaaacagtagcatgcagagacataaaattgggat |
4012157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 25875905 - 25875840
Alignment:
| Q |
29 |
gattcaccttgaaaaatcacctgtgcatgaaaaggtagcatgcagcgatataaaattgggataaat |
94 |
Q |
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| T |
25875905 |
gattcaccttgaaaagtcacctgcacacgaaacagtagcatgcagagacataaaattgggataaat |
25875840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 14015955 - 14015903
Alignment:
| Q |
163 |
tcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggc |
215 |
Q |
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| T |
14015955 |
tcatgttcagcaagtagcttcaattctcttgcaattgctttatcttcaggggc |
14015903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 15563309 - 15563257
Alignment:
| Q |
163 |
tcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggc |
215 |
Q |
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| T |
15563309 |
tcatgttcagaaagtagcttcaattctcttgaaattgctttatcttcaggggc |
15563257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 15575956 - 15575904
Alignment:
| Q |
163 |
tcatgttcagcaagcagcttcagttttcttgcaattgttttatcttcaggggc |
215 |
Q |
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| T |
15575956 |
tcatgttcagaaagtagcttcaattctcttgaaattgctttatcttcaggggc |
15575904 |
T |
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