View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_high_60 (Length: 205)
Name: NF16931_high_60
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_high_60 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 179369 - 179540
Alignment:
| Q |
19 |
atatcagcaaagacacatatctaccattttaatatagggaaaacagatgccaaagtatgcttaattttcttaatgaaggatctatctatggacattatga |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
179369 |
atataagcaaagacacatatctaccattttaatatagggaaaacagatgccaaagtatgcttaagtttcttaatgaaggatctatctatggacattatga |
179468 |
T |
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| Q |
119 |
agcaatcaagtttaaatccttcatttggaaaacattgaacaaagacaaatagccaattttattgtcttttct |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
179469 |
agcaatcaagtttaaatccttcatttggaaaacattgaacaaagacaaatagccaattttattgtcttttct |
179540 |
T |
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Target: scaffold0019; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 150536 - 150702
Alignment:
| Q |
24 |
agcaaagacacatatctaccattttaatatagggaaaacagatgccaaagtatgcttaattttcttaatgaaggatctatctatggacattatgaagcaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
150536 |
agcaaagacacatatctaccattttaatatagggaaaacatatgccaaagtatgcttaagtttcttaatgaaggatctatctatggacattatgaagcaa |
150635 |
T |
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| Q |
124 |
tcaagtttaaatccttcatttggaaaacattgaacaaagacaaatagccaattttattgtcttttct |
190 |
Q |
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| T |
150636 |
tcaagtttaaatccttcatttggaaaacattgaacaaagacaaatagccaattttattgtcttttct |
150702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 441876 - 441772
Alignment:
| Q |
86 |
tcttaatgaaggatctatctatggacattatgaagcaatcaagtttaaatccttcatttggaaaacattgaacaaagacaaatagccaattttattgtct |
185 |
Q |
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||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
441876 |
tcttaattaaggatctagctatggacattatgaagcaatctagtttaaatccttcatttgaaaaacattgaacaaagacaaatagccaattttattgtct |
441777 |
T |
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| Q |
186 |
tttct |
190 |
Q |
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||||| |
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| T |
441776 |
tttct |
441772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 21268597 - 21268493
Alignment:
| Q |
86 |
tcttaatgaaggatctatctatggacattatgaagcaatcaagtttaaatccttcatttggaaaacattgaacaaagacaaatagccaattttattgtct |
185 |
Q |
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||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| |
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| T |
21268597 |
tcttaattaaggatctacctatggacattatgaagcaatctagtttaaatccttcatttgaaaaacattgaacagagacaaatagctaattttattgtct |
21268498 |
T |
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| Q |
186 |
tttct |
190 |
Q |
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||||| |
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| T |
21268497 |
tttct |
21268493 |
T |
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