View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_10 (Length: 573)
Name: NF16931_low_10
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 21 - 563
Target Start/End: Complemental strand, 52771694 - 52771152
Alignment:
| Q |
21 |
aacctcgcctttacgcgtgtccctggtacttggcgttggatgttgggtgtttcagctgtccctgcacttgttcaattcattctcatgcttttcctccctg |
120 |
Q |
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| T |
52771694 |
aacctcgcctttacgcgtgtccctggtacttggcgttggatgttgggtgtttcagctgtccctgcacttgttcaattcattctcatgcttttcctccctg |
52771595 |
T |
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| Q |
121 |
aatcaccaagatggctttttatgaagaatagaaagaatgaagctgttgatgtcatttccaacatctatgacttggctcgtcttgaagacgaagttgattt |
220 |
Q |
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| T |
52771594 |
aatcaccaagatggctttttatgaagaatagaaagaatgaagctgttgatgtcatttccaacatctatgacttggctcgtcttgaagacgaagttgattt |
52771495 |
T |
|
| Q |
221 |
tctaacagctgaggcagaacaagacagacagaaaaatatgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttgga |
320 |
Q |
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| T |
52771494 |
tctaacagctgaggcagaacaagacagacagaaaaatatgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttgga |
52771395 |
T |
|
| Q |
321 |
gcaggattgatggtgttccaacagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttgg |
420 |
Q |
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| T |
52771394 |
gcaggattgatggtgttccaacagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttgg |
52771295 |
T |
|
| Q |
421 |
ctcttcaaatctcactctttgttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttg |
520 |
Q |
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| T |
52771294 |
ctcttcaaatctcactctttgttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttg |
52771195 |
T |
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| Q |
521 |
tagcttaggaggagtgtttacatctttggttctcttgtctgtg |
563 |
Q |
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| T |
52771194 |
tagcttaggaggagtgtttacatctttggttctcttgtctgtg |
52771152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 535
Target Start/End: Complemental strand, 52767403 - 52767225
Alignment:
| Q |
357 |
aacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatg |
456 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||| | ||||||| |||||| |
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| T |
52767403 |
aacacagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatg |
52767304 |
T |
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| Q |
457 |
ctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagt |
535 |
Q |
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| T |
52767303 |
ctgccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctgtatagcttaggaggagt |
52767225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 342 - 490
Target Start/End: Original strand, 392439 - 392587
Alignment:
| Q |
342 |
cagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttg |
441 |
Q |
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|||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || || | || |||||||||||| | || ||| | | |
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| T |
392439 |
cagtttacaggtataaacacggtgatgtactacagtccaaccattgttcaaatggctggcttccatgccaatcagttggctcttcttctgtccctcatag |
392538 |
T |
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| Q |
442 |
ttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattga |
490 |
Q |
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| T |
392539 |
ttgctggcatgaacgctgtcggaacaattcttggcatttaccttattga |
392587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 390723 - 390814
Alignment:
| Q |
51 |
tggcgttggatgttgggtgtttcagctgtccctgcacttgttcaattcattctcatgcttttcctccctgaatcaccaagatggctttttat |
142 |
Q |
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||||| |||||| | |||||||||| ||| ||||||||| | || |||||| |||||| |||||||| ||||| ||||||||||| ||||| |
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| T |
390723 |
tggcgatggatgcttggtgtttcaggtgtgcctgcacttatccagttcatttgcatgctcttcctccccgaatctccaagatggctatttat |
390814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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