View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16931_low_15 (Length: 514)
Name: NF16931_low_15
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 506
Target Start/End: Original strand, 7761216 - 7761706
Alignment:
| Q |
17 |
acttccctatacataatacatgaaaaatgtagatagtttgagactaaaatatatttgccaaagttnnnnnnnngaa-ggtatattaacaaagtaaaaatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
7761216 |
acttccctatacataatacatgaaaaatgtagatagtttgagactaaaatatatttgccaaagttaaaaaaaagaaaggtatattaacaaagtaaaaatg |
7761315 |
T |
|
| Q |
116 |
atataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7761316 |
atataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaac |
7761415 |
T |
|
| Q |
216 |
aatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactggg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7761416 |
aatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaagagacatttactaacaaatactcgtataactggg |
7761515 |
T |
|
| Q |
316 |
aaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7761516 |
aaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagata |
7761615 |
T |
|
| Q |
416 |
ggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatatccgattcccctatgct |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
7761616 |
ggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatatcccattcctctatgct |
7761706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 121 - 490
Target Start/End: Original strand, 7837738 - 7838107
Alignment:
| Q |
121 |
attctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatct |
220 |
Q |
| |
|
||||| || |||||||||||||| ||| | ||| |||| | |||||||||||| ||||||||||||||||||||||| ||||| || ||||||| ||||| |
|
|
| T |
7837738 |
attcttaccaagtttcctttcagcacatcaagagcatctttatgagaccataacctgctgcgttcaccagggtttgaagtcgattctttccgaataatct |
7837837 |
T |
|
| Q |
221 |
ctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacatttactaacaaatactcgtataactgggaaaaa |
320 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| | || |
|
|
| T |
7837838 |
ctctacccatgtcttgtattagatcatgcatctctaaacaaccattttcatcaacaattaacagacatttgctaacaaagactcgtataactgggtagaa |
7837937 |
T |
|
| Q |
321 |
atcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccagaaaagctttttgttccaagtcagataggcca |
420 |
Q |
| |
|
| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
7837938 |
accacaagcatcgagtatccttttaacataatcccatctttcgcctttgaaaaaacaagcaatgtccagaaaaactttctggtccaagtcagataggcct |
7838037 |
T |
|
| Q |
421 |
ttgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatat |
490 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
7838038 |
ttgtagctgatttccagtacactttgaatctcagcatctggaacctttctatatttctgcagttcaatat |
7838107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 91 - 497
Target Start/End: Original strand, 7754192 - 7754598
Alignment:
| Q |
91 |
aaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagaccataatctgctgcgttcaccag |
190 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| || || ||||||||||||||| | |||||||| | ||||||||| |||||||| |||||||||| |
|
|
| T |
7754192 |
aaggtctattaagaaagtaaagatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccag |
7754291 |
T |
|
| Q |
191 |
ggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagttaggagacattt |
290 |
Q |
| |
|
|||||||||| || || ||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||| |
|
|
| T |
7754292 |
ggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaacagttatgagacattt |
7754391 |
T |
|
| Q |
291 |
actaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagcaatgtccaga |
390 |
Q |
| |
|
|||| ||| |||||||||||||| | ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||| || ||||| ||| |
|
|
| T |
7754392 |
actattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttgaagaaacacgcgatgtctaga |
7754491 |
T |
|
| Q |
391 |
aaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgcaattcaatat |
490 |
Q |
| |
|
||| ||| || ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||| | |||||||| |
|
|
| T |
7754492 |
aaaattttctggtccaagtcagataggcctttgtagctgatttccattacaccttgaatctcagcatctgggacctttctatatttctgaagttcaatat |
7754591 |
T |
|
| Q |
491 |
ccgattc |
497 |
Q |
| |
|
|| |||| |
|
|
| T |
7754592 |
cccattc |
7754598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 7828590 - 7828478
Alignment:
| Q |
162 |
atgagaccataatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaa |
261 |
Q |
| |
|
|||| ||||||| |||||||| | ||||||| || || ||| | ||| | ||||| |||||||||||| |||||||||| ||||||||| || | || |
|
|
| T |
7828590 |
atgataccataacctgctgcggttaccagggattaatagcgatttctttctaacaacctctctacccatatcttgtattagatcatgcatctccaagcag |
7828491 |
T |
|
| Q |
262 |
ccattttcatcaa |
274 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7828490 |
ccattttcatcaa |
7828478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University