View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_16 (Length: 512)
Name: NF16931_low_16
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 53810333 - 53810816
Alignment:
| Q |
19 |
aatgtaccatgcctttcctctttatatgtagttccatctttttctagtggttatgttctttttatgaggtggaataaaatagaaaaagttcttgctatcc |
118 |
Q |
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| T |
53810333 |
aatgtaccatgcttttcctctttatatgtagttccatctttttctagtggttatgttctttttatgaggtggaataaaatagaaaaagttcttgctatcc |
53810432 |
T |
|
| Q |
119 |
tgcaatatcctaatttacgagaagtcttcatctattttgattccttaataagcatataaacgcagagttatgccataaatttgtagataacctataatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
53810433 |
tgcaatatcctaatttacgagaagtcttcatctattttgattccgtaataagcatataaacgcagagttatgccatgaatttgcagataacctataatac |
53810532 |
T |
|
| Q |
219 |
caaacaccactgccctacaaaaacatgacaaaagtatgtgacttgaatcttgatagctttcactcatacgtacccatatgataaaaaggcagagaatttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53810533 |
caaacaccactgccctacaaaaacatgacaaaagtatgtgacttgaatcttgatagctttcactcatacgtatccatatgataaaaaggcagagaatttg |
53810632 |
T |
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| Q |
319 |
gacactaannnnnnnagacccagggctgttggccttttggtggtccatttagtctagattaagttttttatatatattagaagaaaaagtctagatcaag |
418 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53810633 |
gacactaatttttttagacccagggctgttggccttttggtggtcca-ttagtctagattaagttttttatatatattaaaagaaaaagtctagatcaag |
53810731 |
T |
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| Q |
419 |
ttatcttattttcactcaaaccaagttactcgtttcattgcaaataatattatgaatacaataaaaatcacacataggagtataa |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53810732 |
ttatcttattttcactcaaaccaagttactcgtttcattgcaaataatattatgaatacaataaaaatcacacataggagtataa |
53810816 |
T |
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