View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_17 (Length: 502)

Name: NF16931_low_17
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_17
NF16931_low_17
[»] scaffold0536 (5 HSPs)
scaffold0536 (21-260)||(6497-6736)
scaffold0536 (307-489)||(6268-6450)
scaffold0536 (34-225)||(10514-10705)
scaffold0536 (307-484)||(10257-10432)
scaffold0536 (351-433)||(1278-1360)
[»] chr4 (10 HSPs)
chr4 (35-260)||(48912331-48912556)
chr4 (21-260)||(48958098-48958337)
chr4 (33-260)||(48965295-48965519)
chr4 (307-470)||(48912121-48912284)
chr4 (43-260)||(48961267-48961486)
chr4 (307-468)||(48958384-48958545)
chr4 (307-489)||(48965566-48965748)
chr4 (34-148)||(48974085-48974199)
chr4 (76-119)||(48951252-48951295)
chr4 (310-344)||(48974349-48974383)
[»] chr6 (4 HSPs)
chr6 (43-226)||(12590192-12590375)
chr6 (307-470)||(12589945-12590108)
chr6 (307-470)||(12483240-12483403)
chr6 (55-221)||(12483492-12483658)
[»] chr2 (5 HSPs)
chr2 (40-260)||(13448336-13448553)
chr2 (58-260)||(13440191-13440390)
chr2 (307-465)||(13448600-13448758)
chr2 (25-260)||(13454792-13455024)
chr2 (390-466)||(13455154-13455230)
[»] chr8 (1 HSPs)
chr8 (43-260)||(12641467-12641684)
[»] chr7 (2 HSPs)
chr7 (308-420)||(3417356-3417468)
chr7 (25-260)||(3417516-3417748)
[»] chr5 (3 HSPs)
chr5 (81-218)||(12540699-12540836)
chr5 (307-420)||(28385571-28385684)
chr5 (171-256)||(28385438-28385520)


Alignment Details
Target: scaffold0536 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 6736 - 6497
Alignment:
Q  21 caccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6736 caccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctca 6637  T
Q  121 acagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttct 220  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6636 acagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttct 6537  T
Q  221 tctttccgatatttctctcttcgaatccctttggcaacca 260  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6536 tctttccgatatttctctcttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 307 - 489
Target Start/End: Complemental strand, 6450 - 6268
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6450 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 6351  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctgtgct 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6350 acaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacactttgttgtcccctctgtgct 6268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 10705 - 10514
Alignment:
Q  34 cgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcc 133  Q
    ||||| || ||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  10705 cgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattcc 10606  T
Q  134 acccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt 225  Q
    |||||||||| |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| |||||||||||||||||||||||    
T  10605 acccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttcttt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 307 - 484
Target Start/End: Complemental strand, 10432 - 10257
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    |||||||| ||||  |||| || |||||||||||||| ||  || |||||||| |||||||||||||| |  |||   |||| |||||||||||| ||||    
T  10432 ggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgt 10333  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctct 484  Q
    ||||||||||  ||||| ||||| |||  ||||||||||||||||| ||||||||||||||||| |||| ||| ||||    
T  10332 acaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctctct 10257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 1360 - 1278
Alignment:
Q  351 tgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgtacaacactgagttatctggcttcgagt 433  Q
    ||||||||| || | ||||||||| ||||||  ||| ||| |||||||||||||||| |  |||||||||||| |||| ||||    
T  1360 tgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagt 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 35 - 260
Target Start/End: Complemental strand, 48912556 - 48912331
Alignment:
Q  35 gcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcca 134  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  48912556 gcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattcca 48912457  T
Q  135 cccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatattt 234  Q
    ||||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||| ||    
T  48912456 cccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataatt 48912357  T
Q  235 ctctcttcgaatccctttggcaacca 260  Q
    |||||||| || ||||||||||||||    
T  48912356 ctctcttcaaacccctttggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 48958098 - 48958337
Alignment:
Q  21 caccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctca 120  Q
    ||||||||||| |||||| |  ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||||||||     
T  48958098 caccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctcc 48958197  T
Q  121 acagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttct 220  Q
    |||||||| |||||||| ||||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| ||||    
T  48958198 acagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttct 48958297  T
Q  221 tctttccgatatttctctcttcgaatccctttggcaacca 260  Q
    ||||||| || ||||||||||||||||| || ||||||||    
T  48958298 tctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 48965295 - 48965519
Alignment:
Q  33 tcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattc 132  Q
    |||||| | ||||||||  ||||| ||||| ||||||||||| ||    ||||| || |||||||||||||| |||| ||||||||| || ||||| |||    
T  48965295 tcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttc 48965394  T
Q  133 cacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatat 232  Q
    || |||||||| |||||||| |||||||||||   |||||||| ||||| ||| || ||||||||||||||||||||||||||   ||||||||| || |    
T  48965395 caaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---cttctttccaatgt 48965491  T
Q  233 ttctctcttcgaatccctttggcaacca 260  Q
    |||||||||||||||||||||| |||||    
T  48965492 ttctctcttcgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 307 - 470
Target Start/End: Complemental strand, 48912284 - 48912121
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    ||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | |||  |||||||||||||||||    
T  48912284 ggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgt 48912185  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 470  Q
    ||| ||| ||||||||| | |||||||  |||||||||| ||||||||||||||||||||||||    
T  48912184 acaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacact 48912121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 43 - 260
Target Start/End: Original strand, 48961267 - 48961486
Alignment:
Q  43 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaa--ttccacccaca 140  Q
    ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| || | |||||||||| |||||||||  |||||   |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  141 atgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctct 240  Q
    ||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctct 48961466  T
Q  241 tcgaatccctttggcaacca 260  Q
    || ||||| || ||||||||    
T  48961467 tcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 468
Target Start/End: Original strand, 48958384 - 48958545
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    |||||||||||||  |||| |||||| ||||||||||||||||| |||||||| |||||||||||||| |  |||   |||| |||||||||||||||||    
T  48958384 ggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgt 48958483  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaaca 468  Q
    ||||||||||||||| |  |||| |||  ||||||||||||||  | |||||||| ||||||    
T  48958484 acaacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaaca 48958545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 489
Target Start/End: Original strand, 48965566 - 48965748
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    |||| ||||||||| || |  |||||||||||||||||  |||| |||||||| ||||| ||||||||| |  || | || | ||||||||||| |||||    
T  48965566 ggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgt 48965665  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacactttgttgtcccctctgtgct 489  Q
    ||||||||||||||| | |||| || |  |||||||||| |||||| ||||| |||||  |||| | ||||||||||| ||||    
T  48965666 acaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctctctgct 48965748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 48974085 - 48974199
Alignment:
Q  34 cgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcc 133  Q
    |||||||| ||||||||||| || ||||| ||||||||  | ||||| |||||||||||||| ||||||||||||||||| || || || ||||| ||||    
T  48974085 cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttcc 48974184  T
Q  134 acccacaatgcgtca 148  Q
    |||| ||||| ||||    
T  48974185 acccgcaatgtgtca 48974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 48951252 - 48951295
Alignment:
Q  76 tgcaccggccacgtgatcatcggaacccctgcactaacagcctc 119  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  48951252 tgcaccggccacgtgatcatcggaacccctacactaatagcctc 48951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 48974349 - 48974383
Alignment:
Q  310 acaacccatatgaatttgtgacccgatgcttctat 344  Q
    |||||||||||||||| ||||||||||||||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctat 48974383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 43 - 226
Target Start/End: Complemental strand, 12590375 - 12590192
Alignment:
Q  43 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 142  Q
    ||||||||||| ||||||||||| ||||| || | ||  ||||| |||||||||||||  || |||||||| ||||| ||   ||||||||| |||||||    
T  12590375 gttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaat 12590276  T
Q  143 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttc 226  Q
    | ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  12590275 gtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttc 12590192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 307 - 470
Target Start/End: Complemental strand, 12590108 - 12589945
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    |||| |||||||| ||||| ||| || ||||||||||| ||||| | |||||| |||||||||||||| | ||||  ||||| ||| |||||||||||||    
T  12590108 ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt 12590009  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 470  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||| |||||  ||||||||||    
T  12590008 acaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacact 12589945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 307 - 470
Target Start/End: Complemental strand, 12483403 - 12483240
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    |||||||||||||||||||| | ||||||||||||||| || |||| ||| |||||||| |||||||| | ||||  ||||| ||| |||||||||||||    
T  12483403 ggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgt 12483304  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaacact 470  Q
    |||||||||| || ||| |||| |||| |||||||||  ||||||| ||||| |||||||||||    
T  12483303 acaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacact 12483240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 12483658 - 12483492
Alignment:
Q  55 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 154  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||| || || |||   |||||||| ||||| || |||||||| |    
T  12483658 tcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatg 12483559  T
Q  155 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 221  Q
    ||||||| ||   ||||||||||||||  || ||||| ||||| ||||| || || |||||| ||||    
T  12483558 cacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatctt 12483492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 40 - 260
Target Start/End: Original strand, 13448336 - 13448553
Alignment:
Q  40 tgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccac 139  Q
    ||||||||||  || |||||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||||||| || || || |||| ||| |    
T  13448336 tgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgc 13448435  T
Q  140 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 239  Q
    |||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||   ||||||||||||||    
T  13448436 aatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctc 13448532  T
Q  240 ttcgaatccctttggcaacca 260  Q
    ||| |||||||| || |||||    
T  13448533 ttcaaatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 13440191 - 13440390
Alignment:
Q  58 ttgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcac 157  Q
    ||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||| ||| ||| | || |||| ||| ||||||||||||||  | |    
T  13440191 ttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatcccc 13440290  T
Q  158 ccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaa 257  Q
    |||| ||   ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| || ||   |  || ||||||||||||||||||||||||||    
T  13440291 ccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctc---ctaatgtttctctcttcgaatccctttggcaa 13440387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 465
Target Start/End: Original strand, 13448600 - 13448758
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    ||||||||||||||||||  |||||| |||||||||||| ||||||| |||||||| ||||||||||| |  |||  |   | ||||||||| |||||||    
T  13448600 ggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgt 13448699  T
Q  407 acaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcaca 465  Q
    |||||||||||||| ||  ||  || || ||||||||||| | |||||||||| |||||    
T  13448700 acaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcaca 13448758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 13454792 - 13455024
Alignment:
Q  25 ccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacag 124  Q
    ||||||| ||| || |||||||| |  || || ||||| ||||| ||||| || || |||||||| ||||| ||||| ||    ||||||||||| ||      
T  13454792 ccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacga 13454891  T
Q  125 tggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctt 224  Q
    | || |||| ||| ||||||||||||||  | ||||| ||   ||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||     
T  13454892 ttgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct- 13454990  T
Q  225 tccgatatttctctcttcgaatccctttggcaacca 260  Q
      |||| ||| ||||||| |||||||| ||||||||    
T  13454991 --cgatgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 466
Target Start/End: Original strand, 13455154 - 13455230
Alignment:
Q  390 gcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcgtgcacactcacaa 466  Q
    ||||||||| ||||||||||| ||||||||| ||  ||| ||||| ||||| ||||| |||||||| ||| ||||||    
T  13455154 gcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaa 13455230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 43 - 260
Target Start/End: Complemental strand, 12641684 - 12641467
Alignment:
Q  43 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 142  Q
    ||||||| ||| ||||| || || |||||||| ||||| |||||||||||||| |||| |||||||||||||||||| ||   ||| ||| |||| ||||    
T  12641684 gttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaat 12641585  T
Q  143 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttc 242  Q
    ||||||| || |||||||||||   |||||| |||||||| |||||||| |||||  ||||||| || ||||| ||||| ||| | | ||||||||||||    
T  12641584 gcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatttctctcttc 12641485  T
Q  243 gaatccctttggcaacca 260  Q
    |||||| || ||||||||    
T  12641484 gaatcctttaggcaacca 12641467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 420
Target Start/End: Complemental strand, 3417468 - 3417356
Alignment:
Q  308 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 407  Q
    |||||||||||||||||  ||||||||||||||||||  |  |||||||||| || ||||||||||| | ||||  |  |||||||||||| ||||||||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  408 caacactgagtta 420  Q
    |||||||||||||    
T  3417368 caacactgagtta 3417356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 3417748 - 3417516
Alignment:
Q  25 ccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacag 124  Q
    ||||||| ||| || |||||||| |  || |||||| | ||||| ||||| ||  |||||||||| ||||| ||||| ||||||| |||||||||||||     
T  3417748 ccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaa 3417649  T
Q  125 tggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctt 224  Q
      || |||| ||||||||| ||||||||  | || || ||   ||||||||| |||  ||| ||||| |||||||||||||  ||||||||   ||||||    
T  3417648 atgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttctt 3417552  T
Q  225 tccgatatttctctcttcgaatccctttggcaacca 260  Q
    ||| || |||||||| || |||||||| ||||||||    
T  3417551 tccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 12540699 - 12540836
Alignment:
Q  81 cggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatc 180  Q
    ||||||||| ||||| ||||| || |||| ||||||||| ||| | || || | ||||||||| ||||||||  | ||||| ||   ||||||||| |||    
T  12540699 cggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc 12540798  T
Q  181 ataacttgtggagcccaacccctaataatcaaaccctt 218  Q
     |||| ||||| |||||||||||||| |||||||||||    
T  12540799 ttaacctgtggggcccaacccctaatgatcaaaccctt 12540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 420
Target Start/End: Original strand, 28385571 - 28385684
Alignment:
Q  307 ggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgt 406  Q
    ||||||||||||||||||  |||||| ||||||||||   | ||||||||||| || ||||||||||| | |||| ||  || ||||||||| |||||||    
T  28385571 ggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgt 28385670  T
Q  407 acaacactgagtta 420  Q
    |||  |||||||||    
T  28385671 acacaactgagtta 28385684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 28385438 - 28385520
Alignment:
Q  171 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 256  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || |||||||||||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggca 28385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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