View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_21 (Length: 490)
Name: NF16931_low_21
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 6 - 472
Target Start/End: Complemental strand, 46795898 - 46795435
Alignment:
| Q |
6 |
aggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatt |
105 |
Q |
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| T |
46795898 |
aggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgttctctttccctaataatt |
46795799 |
T |
|
| Q |
106 |
tcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactct |
205 |
Q |
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| T |
46795798 |
tcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttccaaataacaatactactct |
46795699 |
T |
|
| Q |
206 |
tcttgatgattcactactttctattcctttcactacatcaacacatcatgatgttgttccattccctgatgctaattttgcagattgtaacaacactgca |
305 |
Q |
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| T |
46795698 |
tcttgatgattcactactttctattcctttc---acatcaacacatcatgatgttgttccattccctgatactaattttgcagattgtaacaacactgca |
46795602 |
T |
|
| Q |
306 |
atgtttgaacaagataatggctacaactttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttatag |
405 |
Q |
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| T |
46795601 |
atgtttgaacaagataatggctacaactttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttatag |
46795502 |
T |
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| Q |
406 |
gaggaaagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagatt |
472 |
Q |
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| T |
46795501 |
gaggaaagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggtaagatt |
46795435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 6032037 - 6032092
Alignment:
| Q |
411 |
aagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggt |
466 |
Q |
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| T |
6032037 |
aagaaagacaggcatagcaagattcacacatctcaagggttgagagacagaagggt |
6032092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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