View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_22 (Length: 461)

Name: NF16931_low_22
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_22
NF16931_low_22
[»] chr5 (4 HSPs)
chr5 (20-285)||(12540921-12541186)
chr5 (23-285)||(28385570-28385832)
chr5 (331-400)||(12540806-12540875)
chr5 (335-400)||(28385455-28385520)
[»] chr7 (2 HSPs)
chr7 (22-283)||(3417210-3417468)
chr7 (335-400)||(3417520-3417585)
[»] chr2 (5 HSPs)
chr2 (18-285)||(13440436-13440703)
chr2 (22-285)||(13448599-13448862)
chr2 (18-284)||(13455071-13455337)
chr2 (335-400)||(13454955-13455020)
chr2 (337-400)||(13448484-13448547)
[»] scaffold0536 (3 HSPs)
scaffold0536 (370-461)||(6539-6630)
scaffold0536 (18-285)||(6184-6451)
scaffold0536 (370-461)||(10521-10612)
[»] chr6 (3 HSPs)
chr6 (23-237)||(12589847-12590061)
chr6 (370-461)||(12590200-12590291)
chr6 (335-363)||(12483454-12483482)
[»] chr4 (10 HSPs)
chr4 (18-239)||(48958429-48958650)
chr4 (23-285)||(48912023-48912285)
chr4 (18-120)||(48962695-48962797)
chr4 (340-458)||(48965392-48965510)
chr4 (39-114)||(48965736-48965811)
chr4 (377-461)||(48912380-48912464)
chr4 (335-458)||(48958207-48958333)
chr4 (335-458)||(48961356-48961482)
chr4 (28-68)||(48951687-48951727)
chr4 (229-281)||(48974349-48974401)
[»] chr8 (2 HSPs)
chr8 (18-82)||(12641154-12641218)
chr8 (151-239)||(12641287-12641375)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 12541186 - 12540921
Alignment:
Q  20 tccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541186 tccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatga 12541087  T
Q  120 gggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgac 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541086 gggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgac 12540987  T
Q  220 aaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 285  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12540986 aaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcct 12540921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 28385832 - 28385570
Alignment:
Q  23 aacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatgaggg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||   ||||||||||||||| || ||||||  || |    
T  28385832 aacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaaactgttcaagagaaagcagagaagggaaacaagag 28385733  T
Q  123 tgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaa 222  Q
    || || ||| |||||||||| ||| | ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||    
T  28385732 tgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagcataaaccatttctctgataaa 28385633  T
Q  223 caactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 285  Q
    ||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||    
T  28385632 caactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcct 28385570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 12540875 - 12540806
Alignment:
Q  331 tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggctccac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12540875 tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccac 12540806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 28385520 - 28385455
Alignment:
Q  335 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggctccac 400  Q
    |||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||| ||||    
T  28385520 tgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccac 28385455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 22 - 283
Target Start/End: Original strand, 3417210 - 3417468
Alignment:
Q  22 caacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatgagg 121  Q
    |||||||| |||||||||   ||||||||||||||||||||||||||| |||||   |||  || || || || ||||||| ||||  ||||||| ||||    
T  3417210 caacactatgagaaaaccgtaggtcacaaggcttggcatcttggtccatcttct---atttggagaaccactctagagaaatcaggtgggggaaacgagg 3417306  T
Q  122 gtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaa 221  Q
    |||||| ||||||||| |||| |||  | |||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||  |||||| ||| ||    
T  3417307 gtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataa 3417406  T
Q  222 acaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttc 283  Q
    |||||||||||||||||||| |||| |||||| |  ||||||||||||||||||||||||||    
T  3417407 acaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 3417520 - 3417585
Alignment:
Q  335 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggctccac 400  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccac 3417585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 13440703 - 13440436
Alignment:
Q  18 catccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaat 117  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||||  |||| ||||||||||||||||| |||||||||     
T  13440703 catccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaaaccattcaagagaaagcagagaggggaaag 13440604  T
Q  118 gagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttg 217  Q
    ||||||| || ||    |||||| | | | || |||||| ||||| || |||||||||| ||| |||||||||||||||||||||| ||  |||||| ||    
T  13440603 gagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagcatcaactatttctctg 13440504  T
Q  218 acaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 285  Q
    | ||||||||||||||||| || |||||| |||||| |    ||||||||||||||||||||||||||    
T  13440503 ataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcct 13440436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 22 - 285
Target Start/End: Complemental strand, 13448862 - 13448599
Alignment:
Q  22 caacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatgagg 121  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||  ||||    |||||||||| ||| ||||||||||||||    
T  13448862 caacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagaggggaaatgagg 13448763  T
Q  122 gtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaa 221  Q
    |||||| || || |||||||  ||| || |||||| | ||| ||  ||||||||||||| |||||||||||||||||||||| ||  |||| | ||| ||    
T  13448762 gtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataa 13448663  T
Q  222 acaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 285  Q
    ||||||||| ||||| ||||| ||  |||||| |   |||||||||||||||||||||||||||    
T  13448662 acaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcct 13448599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 13455337 - 13455071
Alignment:
Q  18 catccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaat 117  Q
    ||||||||||||||| ||||| || |||||||||| ||||||| |||||||||||||| |||||   | || | ||||||| ||| ||| |||||||||     
T  13455337 catccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttgcagaaccgttcaagaaaaatcagagaggggaaac 13455238  T
Q  118 gagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttg 217  Q
    |||| |  || || ||  ||||||| ||| ||||||||  ||||| ||  ||||||||||||  |||||||||||||||||||||| ||| |||  | |     
T  13455237 gaggtttttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatcta 13455138  T
Q  218 acaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcc 284  Q
    | ||||||||||||||||| |||||| || |||||| |   ||||| || |||||||||||||||||    
T  13455137 ataaacaactatatgagatggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 13455020 - 13454955
Alignment:
Q  335 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggctccac 400  Q
    |||||||||||||||| |||| |||||| |  ||||||||||||||||||||||||||||| ||||    
T  13455020 tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccac 13454955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 13448547 - 13448484
Alignment:
Q  337 ccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggctccac 400  Q
    |||||||||||||| |||||||| || || || |||||||||||||||||||||||||| ||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccac 13448484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 6539 - 6630
Alignment:
Q  370 aagggtttgatcattaggggttgggctccacttgttatgatttttagccacaaatctgtgggtgcgtctatgacgcattgtgggtggaattc 461  Q
    ||||||||||| |||||||||||||||||||  ||||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||||    
T  6539 aagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctctgggtgcgtttatgacgcattgtgggtggaattc 6630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 6184 - 6451
Alignment:
Q  18 catccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaat 117  Q
    |||| |||||||||||||||| || |||||||| |||||||||||||||||  ||||| ||||||  | ||   ||||||| ||||||  ||||||| |     
T  6184 catcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctcttattcgtagaactgttcaagaaaaagcacagaggggacaa 6283  T
Q  118 gagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttg 217  Q
     |  ||| || ||||| ||| ||||  || || |||||  ||||  ||| || |||||||||| |||||||||| ||||||||| ||   | ||||   |    
T  6284 caaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccgg 6383  T
Q  218 acaaacaactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 285  Q
    | |||||||| || ||||||||||| |   |||||| |  |||||||  |||||||||||||||||||    
T  6384 ataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcct 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 10521 - 10612
Alignment:
Q  370 aagggtttgatcattaggggttgggctccacttgttatgatttttagccacaaatctgtgggtgcgtctatgacgcattgtgggtggaattc 461  Q
    ||||||||||| |||| ||||||||| || |  ||||||||| | |||||||    ||||||||||| |||||| |||||||||||||||||    
T  10521 aagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattc 10612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 12589847 - 12590061
Alignment:
Q  23 aacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatgaggg 122  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||   |||||||||||||||  |||||||||||| |    
T  12589847 aacactatgagaaaaccacaggtcacaaggcttggcatcttggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagag 12589946  T
Q  123 tgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaa 222  Q
    || || ||  | ||| ||||  || || ||||| |||||  ||| || |||||| ||| |||||||||| ||||| ||||||    ||||||  || |||    
T  12589947 tgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaa 12590046  T
Q  223 caactatatgagatt 237  Q
    ||||| |||||||||    
T  12590047 caactttatgagatt 12590061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 12590200 - 12590291
Alignment:
Q  370 aagggtttgatcattaggggttgggctccacttgttatgatttttagccacaaatctgtgggtgcgtctatgacgcattgtgggtggaattc 461  Q
    |||||||||||||||||||||||||| ||||  || |||||| | ||||||||  | ||||| |||| |||||| |||||||| ||||||||    
T  12590200 aagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattc 12590291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 363
Target Start/End: Original strand, 12483454 - 12483482
Alignment:
Q  335 tgccgaagggatttgaggagagaaacatt 363  Q
    |||||||||||||||||||||||||||||    
T  12483454 tgccgaagggatttgaggagagaaacatt 12483482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 48958650 - 48958429
Alignment:
Q  18 catccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaat 117  Q
    |||| |||||||| |||||| |||||||||||||| |||||||||||||||  ||||| ||||||   ||| ||||||||||||| ||| ||||||||||    
T  48958650 catcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaagagaaatcagagaggggaaat 48958551  T
Q  118 gagggtgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttg 217  Q
    |||  || ||  |||| ||| |  |  || || ||||||||||   ||  |  |||||||||| |||||||||| ||||||||||||  | |||| | ||    
T  48958550 gagaatgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctg 48958451  T
Q  218 acaaacaactatatgagattgc 239  Q
    | |||||||| |||||||||||    
T  48958450 ataaacaactttatgagattgc 48958429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 48912023 - 48912285
Alignment:
Q  23 aacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatgaggg 122  Q
    |||||||||||||||| ||  ||||||| |||||||||||||||||| ||||| ||||||  | ||  ||||||||||| || | ||| ||| | ||| |    
T  48912023 aacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcagaactattcaagagaaggctgagagaggagaagagag 48912122  T
Q  123 tgctgcgagtgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaa 222  Q
    || || ||||| ||||||||   | || ||||| |||||  | |||| |||||| |||||||||||||| |||||||||  |  |||||| |  || |||    
T  48912123 tgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaa 48912222  T
Q  223 caactatatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgttcct 285  Q
    ||||| ||||||||||| ||||   | |||| |  | |||||  |||||||||||||||||||    
T  48912223 caactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcct 48912285  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 48962797 - 48962695
Alignment:
Q  18 catccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaat 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||||  |||  | |||||||||||||||  |||||| ||    
T  48962797 catcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaagagaaagcagaaaggggacat 48962698  T
Q  118 gag 120  Q
    |||    
T  48962697 gag 48962695  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 458
Target Start/End: Complemental strand, 48965510 - 48965392
Alignment:
Q  340 aagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggctccacttgttatgatttttagccacaaatctgtgggtgcgtcta 439  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| |  ||| ||||| | ||||||    |||||||||| | ||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  440 tgacgcattgtgggtggaa 458  Q
    |||| |||||||| |||||    
T  48965410 tgactcattgtggttggaa 48965392  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 48965811 - 48965736
Alignment:
Q  39 cacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggagggga 114  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||  ||||   ||||||||||||||| |||||||    
T  48965811 cacgggtcataaggcttggcatcttggtccagcttctcttattcgtaaaactgttcaagagaaagcagagagggga 48965736  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 48912380 - 48912464
Alignment:
Q  377 tgatcattaggggttgggctccacttgttatgatttttagccacaaatctgtgggtgcgtctatgacgcattgtgggtggaattc 461  Q
    |||| |||| ||||||||||||||  ||||||||| | ||||||| | | |||||||| | |||||| |||||||||||||||||    
T  48912380 tgattattaagggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtgggtggaattc 48912464  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 48958333 - 48958207
Alignment:
Q  335 tgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggctccacttgttatgatttttagccacaaatctgtggg 431  Q
    ||||||| ||||| || ||||||||||||||||| |||   ||||||||||||||||| ||||| ||||  ||| ||||| | |||||||   | |||||    
T  48958333 tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg 48958234  T
Q  432 tgcgtctatgacgcattgtgggtggaa 458  Q
    ||| | |||||| ||||| ||||||||    
T  48958233 tgcatttatgacacattgcgggtggaa 48958207  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 48961482 - 48961356
Alignment:
Q  335 tgccgaagggatttgaggagagaaacattgga---aaaaagggtttgatcattaggggttgggctccacttgttatgatttttagccacaaatctgtggg 431  Q
    ||||||| |||||||| ||||||||||||| |   || |||||||||||||||| ||| ||||| ||||  ||||||||  |  |||||| | | |||||    
T  48961482 tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg 48961383  T
Q  432 tgcgtctatgacgcattgtgggtggaa 458  Q
    || || |||||||||||| ||||||||    
T  48961382 tgtgtttatgacgcattgcgggtggaa 48961356  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 48951727 - 48951687
Alignment:
Q  28 tacgagaaaaccacgggtcacaaggcttggcatcttggtcc 68  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  48951727 tacgagaaaaccatcggtcacaaggcttggcatcttggtcc 48951687  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 48974401 - 48974349
Alignment:
Q  229 tatgagattgcatgcgcagtagaaggaatgggtcacccattcatatgggttgt 281  Q
    |||||||||||| ||||| |||||| |  |||||||| |||||||||||||||    
T  48974401 tatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 12641154 - 12641218
Alignment:
Q  18 catccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattc 82  Q
    |||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||| | ||||||    
T  12641154 catcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattc 12641218  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 12641287 - 12641375
Alignment:
Q  151 tggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgc 239  Q
    |||||||| ||| |||||| ||| |||||| | |||||||||||||| |||||   | |||||| ||| |||||||| || ||||||||    
T  12641287 tggctcaattcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgc 12641375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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