View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_23 (Length: 460)
Name: NF16931_low_23
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 5870011 - 5870336
Alignment:
| Q |
19 |
ttaagcatttactccaattctttcttaatcaaggcaactcttggattacgtacgacaccctctgaaaagtaatatatcattnnnnnnn----gagtatcc |
114 |
Q |
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| T |
5870011 |
ttaagcatttactccaattctttcttaatcaaggcaactcttggattacgtacgacaccctctgaaaagtaatatatcattaaaaaaaaaaagagtatcc |
5870110 |
T |
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| Q |
115 |
atatattttagttgattacctttttagttaatgggaaataaaagaaatatagaac-ataatataaggatttgattcatcatttgataggacttggatgca |
213 |
Q |
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| T |
5870111 |
atatattttagttgattacctttttagttaatgggaaataaaaaaaatatagaaccataatataaggatttgattcatcattagatacgacttggatgca |
5870210 |
T |
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| Q |
214 |
tttgcagtggaatgaatgactacatgacttactatacccgacaaacattaaacttccaaaatgtgaaattttgactctatattccaaagctttgttccca |
313 |
Q |
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| T |
5870211 |
tttgcagtggaatgaatgactacatgactaa---tacccgacaaacattaaacttccaaaatgtgaaattttgactctatattccaaagctttgttccca |
5870307 |
T |
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| Q |
314 |
ccactcccataccttaaactattccaaag |
342 |
Q |
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| T |
5870308 |
ccactcccataccttaaactattccaaag |
5870336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 5870363 - 5870460
Alignment:
| Q |
353 |
ccatcagaattttatgaaatcctcacaattgtgaatctttatctctaataaacccaatgttcttttttcatatattcacactatcctgatttcctttg |
450 |
Q |
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| T |
5870363 |
ccatcagaattttatgaaatcctcacaattgtgaatctttatctctaataaacccaattttcttttttcatatattcacactatcctgatttcctttg |
5870460 |
T |
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