View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_24 (Length: 439)
Name: NF16931_low_24
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 42991109 - 42990700
Alignment:
| Q |
13 |
agaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcaccataagcaaaatgctag |
112 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| | |
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| T |
42991109 |
agaatgtaaggattaccgctaacatttcccaagaactcaaaatcaatttcgtcgtgagttggcccttgtgatgacaactgcaccataaggaaaatgctcg |
42991010 |
T |
|
| Q |
113 |
taaaaacttttgatttcatgaaga-gctatgtatgttaattaaagttgctttcgaaaaagaaacaacgaaggaatataatatataatgtgaagaagacaa |
211 |
Q |
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||||| |||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42991009 |
taaaagctttcaacttcatgaagaagctatgtatgttaattaaagttgcttttgaaaaagaaacaacgaaggaatataatatataatgtgaagaaggcaa |
42990910 |
T |
|
| Q |
212 |
gaaaagaatcaaattgtatgagtttgatttgaatgaatttagatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtttccagca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42990909 |
gaaaagaatcaaattgtatgagtttgatttgaatgaatt-agatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtttccagca |
42990811 |
T |
|
| Q |
312 |
accaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagccggagactttgtcgagagaaagcgaaagaagctgac |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42990810 |
accagtttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagccggagactttgtcgagagaaagtgaaagaagctgac |
42990711 |
T |
|
| Q |
412 |
caccgttgaat |
422 |
Q |
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| T |
42990710 |
caccgttgaat |
42990700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 276 - 424
Target Start/End: Complemental strand, 35016439 - 35016291
Alignment:
| Q |
276 |
tagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagc |
375 |
Q |
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|||||||||||||| || ||||||||||| |||||||| | || || |||||||||||||| || |||| ||||||| |||| || | ||||||||||| |
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| T |
35016439 |
tagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagccagagc |
35016340 |
T |
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| Q |
376 |
cggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatat |
424 |
Q |
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| ||||||||||| || ||||| || ||||| |||||||| |||||||| |
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| T |
35016339 |
cagagactttgtcaagggaaagtgatagaagttgaccaccattgaatat |
35016291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 35017778 - 35017692
Alignment:
| Q |
11 |
gaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcacca |
97 |
Q |
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| T |
35017778 |
gaagaatataagggtcaccacttgtgtttcccaagaactcaaaatcaatctcatcatgggttggtccttgggatgacagctgtacca |
35017692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 272 - 424
Target Start/End: Original strand, 38214692 - 38214844
Alignment:
| Q |
272 |
tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagcca |
371 |
Q |
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||||||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
38214692 |
tacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagcca |
38214791 |
T |
|
| Q |
372 |
gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatat |
424 |
Q |
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||||| || ||| || |||||||| || ||||| |||||||| |||||||| |
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| T |
38214792 |
gagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatat |
38214844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 268 - 424
Target Start/End: Original strand, 38218909 - 38219065
Alignment:
| Q |
268 |
tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaa |
367 |
Q |
| |
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||||||| ||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |
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| T |
38218909 |
tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaa |
38219008 |
T |
|
| Q |
368 |
gccagagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatat |
424 |
Q |
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||||||||| || ||| || |||||||| || ||||| |||||||| |||||||| |
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| T |
38219009 |
gccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatat |
38219065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 38214420 - 38214506
Alignment:
| Q |
13 |
agaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcaccata |
99 |
Q |
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||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||| |
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| T |
38214420 |
agaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatgacaactgcaccata |
38214506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 38218639 - 38218725
Alignment:
| Q |
13 |
agaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcaccata |
99 |
Q |
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|
||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||| |
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| T |
38218639 |
agaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatgacaactgcaccata |
38218725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 53494838 - 53494776
Alignment:
| Q |
272 |
tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat |
334 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||| || | ||||| ||||||||||| |
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| T |
53494838 |
tacatagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaat |
53494776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 53501937 - 53501885
Alignment:
| Q |
282 |
gcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat |
334 |
Q |
| |
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|||||||| || |||||||||||||||| || | |||||||||||||||||| |
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|
| T |
53501937 |
gcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat |
53501885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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