View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_25 (Length: 434)

Name: NF16931_low_25
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_25
NF16931_low_25
[»] chr2 (16 HSPs)
chr2 (1-426)||(40943956-40944381)
chr2 (339-414)||(40918583-40918658)
chr2 (22-109)||(40158782-40158869)
chr2 (22-75)||(5902502-5902555)
chr2 (23-92)||(40776033-40776102)
chr2 (22-85)||(787396-787459)
chr2 (31-74)||(17443562-17443605)
chr2 (28-107)||(40400821-40400900)
chr2 (31-109)||(42852621-42852699)
chr2 (22-75)||(1318300-1318353)
chr2 (22-75)||(1801732-1801785)
chr2 (22-75)||(12313126-12313179)
chr2 (22-95)||(29430822-29430895)
chr2 (22-95)||(43529791-43529864)
chr2 (22-94)||(16947090-16947161)
chr2 (22-94)||(17017755-17017826)
[»] chr3 (13 HSPs)
chr3 (22-112)||(21872211-21872301)
chr3 (22-85)||(24624274-24624337)
chr3 (22-85)||(43115120-43115183)
chr3 (23-109)||(22667468-22667554)
chr3 (23-109)||(22724107-22724193)
chr3 (25-107)||(44014719-44014801)
chr3 (54-95)||(44237513-44237554)
chr3 (52-115)||(24158429-24158492)
chr3 (23-66)||(30668930-30668973)
chr3 (53-103)||(27795938-27795988)
chr3 (23-61)||(34254775-34254813)
chr3 (22-107)||(41164911-41164996)
chr3 (22-59)||(54837003-54837040)
[»] chr7 (9 HSPs)
chr7 (22-107)||(33894691-33894776)
chr7 (23-109)||(3836602-3836688)
chr7 (54-95)||(19624273-19624314)
chr7 (29-106)||(32410611-32410688)
chr7 (26-75)||(40009544-40009593)
chr7 (22-85)||(25670529-25670592)
chr7 (29-103)||(1710801-1710874)
chr7 (22-75)||(8094370-8094423)
chr7 (22-95)||(20547323-20547396)
[»] chr1 (9 HSPs)
chr1 (22-107)||(32515362-32515447)
chr1 (22-111)||(18327063-18327152)
chr1 (22-108)||(15581318-15581404)
chr1 (22-95)||(3597214-3597287)
chr1 (23-66)||(7941672-7941715)
chr1 (22-85)||(34536222-34536285)
chr1 (61-95)||(38867766-38867800)
chr1 (26-92)||(41638244-41638310)
chr1 (22-95)||(4868464-4868536)
[»] chr6 (12 HSPs)
chr6 (22-85)||(33385593-33385656)
chr6 (23-95)||(27857423-27857495)
chr6 (26-83)||(2732192-2732249)
chr6 (26-108)||(26559159-26559241)
chr6 (22-76)||(283159-283213)
chr6 (24-78)||(32171333-32171387)
chr6 (22-83)||(11600819-11600880)
chr6 (22-95)||(33887894-33887967)
chr6 (27-107)||(738462-738542)
chr6 (34-74)||(24631866-24631906)
chr6 (23-75)||(32976043-32976095)
chr6 (22-74)||(33259882-33259934)
[»] chr8 (17 HSPs)
chr8 (23-100)||(9541093-9541170)
chr8 (22-107)||(2487929-2488014)
chr8 (27-78)||(43908650-43908701)
chr8 (25-107)||(16162827-16162909)
chr8 (22-88)||(42370301-42370367)
chr8 (22-95)||(30191074-30191147)
chr8 (51-95)||(3953895-3953939)
chr8 (27-95)||(26499785-26499853)
chr8 (23-75)||(29169889-29169941)
chr8 (22-109)||(39551128-39551215)
chr8 (33-78)||(2364410-2364455)
chr8 (26-95)||(7714310-7714379)
chr8 (22-107)||(33553304-33553389)
chr8 (49-86)||(37353114-37353151)
chr8 (54-107)||(44236744-44236797)
chr8 (22-78)||(7646270-7646326)
chr8 (26-94)||(24326099-24326167)
[»] chr4 (18 HSPs)
chr4 (22-85)||(50298580-50298642)
chr4 (22-95)||(8328052-8328125)
chr4 (26-95)||(18628486-18628555)
chr4 (22-66)||(23819153-23819197)
chr4 (25-77)||(25717660-25717712)
chr4 (27-95)||(37636119-37636187)
chr4 (22-109)||(2996637-2996724)
chr4 (23-105)||(21157833-21157915)
chr4 (25-107)||(55870263-55870345)
chr4 (22-95)||(7367987-7368060)
chr4 (22-75)||(10172126-10172179)
chr4 (22-115)||(19304990-19305083)
chr4 (33-86)||(22471349-22471402)
chr4 (54-95)||(47970392-47970433)
chr4 (26-74)||(4071946-4071994)
chr4 (374-426)||(22775581-22775633)
chr4 (22-74)||(25434366-25434418)
chr4 (25-65)||(52754666-52754706)
[»] scaffold0428 (1 HSPs)
scaffold0428 (22-74)||(3970-4022)
[»] chr5 (7 HSPs)
chr5 (23-107)||(10640019-10640102)
chr5 (52-95)||(1084072-1084115)
chr5 (28-95)||(13244484-13244551)
chr5 (22-75)||(16380524-16380577)
chr5 (34-94)||(7907958-7908018)
chr5 (23-75)||(28586719-28586771)
chr5 (47-95)||(36796640-36796688)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 40943956 - 40944381
Alignment:
Q  1 ggaaacaacttgtggacatatcatgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggcta 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  40943956 ggaagcaacttgtggacatatcatgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagcta 40944055  T
Q  101 atccaaatatacctaatgcattttagttgaaatataattgtatggatagtattaaagtttgatctctgaatnnnnnnnnttatgagcaaccttacctttt 200  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  40944056 atccaaacatacctaatgcattttagttgaaatctaattgtatggatagtattaaagtttgatctctgaataaaaaaaattatgagcaaccttacctttt 40944155  T
Q  201 tccagcgcaaaggatcgcgtctttttgtgacaacgatggaagtaattttctcaggtgattccattctccaccggcaaaaaggactcttagtttggtcacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40944156 tccagcgcaaaggatcgcgtctttttgtgacaacgatggaagtaattttctcaggtgattccattctccaccggcaaaaaggactcttagtttggtcacg 40944255  T
Q  301 agaataaacaccaacaatttgtctagaagcagtatcaaaatgagttttgctcatgtagtaaacaaagggcttttgacaaggatgtttagcaacaggcctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40944256 agaataaacaccaacaatttgtctagaagcagtatcaaaatgagttttgctcatgtagtaaacaaagggcttttgacaaggatgtttagcaacaggcctt 40944355  T
Q  401 gtgttgaatgcatatgcagtataatc 426  Q
    ||||||||||||||||||||||||||    
T  40944356 gtgttgaatgcatatgcagtataatc 40944381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 40918583 - 40918658
Alignment:
Q  339 aatgagttttgctcatgtagtaaacaaagggcttttgacaaggatgtttagcaacaggccttgtgttgaatgcata 414  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  40918583 aatgagttttactcatgtagtaaacaaagggcttttgacaaggatgtttagcaacaaggctagtgttgaatgcata 40918658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 40158782 - 40158869
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaata 109  Q
    |||||||||||||||||||||||  |   |||| |||| |||||||| ||||||||| ||||||  |||||||| || ||||||||||    
T  40158782 catgtcataagctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataagccaatccaaata 40158869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 5902555 - 5902502
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    |||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  5902555 catgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 40776102 - 40776033
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaa 92  Q
    ||||||||||||||||||||||  | |||||||||| || | |||||||||||| | |||||| ||||||    
T  40776102 atgtcataagctgttttcataagttcttccaaacaggtttataagtgcttatgttagtagataaactcaa 40776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 787396 - 787459
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 85  Q
    |||||||||||||||||||||||  | |  |||||||| ||||||||||||||| || ||||||    
T  787396 catgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagata 787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 17443605 - 17443562
Alignment:
Q  31 agctgttttcataaacttttccaaacagtttcacaagtgcttat 74  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||    
T  17443605 agctgtttccataaactcttccaaacagtctcacaagtgcttat 17443562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 40400900 - 40400821
Alignment:
Q  28 ataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    |||||||||||||||||  |||| |||||| | ||||||||  |||||||| ||||||| || ||||| || ||||||||    
T  40400900 ataagctgttttcataagttttttcaaacaatgtcacaagtctttatgtcagtagataggcttaaataagccaatccaaa 40400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 42852699 - 42852621
Alignment:
Q  31 agctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaata 109  Q
    |||||||||||||  || ||||||||||| ||||||||||||||| ||  |||||   ||||||| || ||||||||||    
T  42852699 agctgttttcataggctcttccaaacagtctcacaagtgcttatgccagcagataagttcaaataagcaaatccaaata 42852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 1318300 - 1318353
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    ||||||||||| ||||||||||| || |  |||||||| |||||||||||||||    
T  1318300 catgtcataagatgttttcataagctctcacaaacagtctcacaagtgcttatg 1318353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 1801732 - 1801785
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    |||||||||||||||||||||||  | | ||||||| | |||||||||||||||    
T  1801732 catgtcataagctgttttcataagttctcccaaacaatatcacaagtgcttatg 1801785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 12313179 - 12313126
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    |||| ||||||||||||||||||| | | ||||||| | |||||||||||||||    
T  12313179 catggcataagctgttttcataaattctcccaaacaatctcacaagtgcttatg 12313126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 29430822 - 29430895
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||| |||||||||  | ||||||| |||  |||||||| |||||||| ||||||  ||||||||    
T  29430822 catgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaaata 29430895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 43529864 - 43529791
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    |||| ||||||||||||||||||| | | ||||||||| ||| ||||||||||  || ||||||  ||||||||    
T  43529864 catggcataagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaata 43529791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 16947090 - 16947161
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaat 94  Q
    ||||||||||| ||||  ||||| || ||||||||||  |||| |||||||||||||||||||| ||| ||||    
T  16947090 catgtcataagttgttc-cataagctgttccaaacagcctcactagtgcttatgtcattagataaactaaaat 16947161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 17017755 - 17017826
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaat 94  Q
    ||||||||||| ||||  ||||| || ||||||||||  |||| |||||||||||||||||||| ||| ||||    
T  17017755 catgtcataagttgttc-cataagctgttccaaacagcctcactagtgcttatgtcattagataaactaaaat 17017826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 21872301 - 21872211
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaatatac 112  Q
    ||||||||||||| |||||| || |||||||||||||| |||||||||||||||||| ||||||   ||||||| | ||||||||| ||||    
T  21872301 catgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaacatac 21872211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 24624274 - 24624337
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 85  Q
    ||||||||||||||||||||||| || ||||||||||| | ||||||||| |||| | ||||||    
T  24624274 catgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagata 24624337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 43115120 - 43115183
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 85  Q
    ||||||||||| ||||| |||||||| ||||||||| | ||||||||| |||||||| ||||||    
T  43115120 catgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagata 43115183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 22667468 - 22667554
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaata 109  Q
    |||| ||| ||||||| |||||||| |  |||||||| |||||||||||||||||| ||||||  |||||||| || |||| |||||    
T  22667468 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaata 22667554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 22724107 - 22724193
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaata 109  Q
    |||| ||| ||||||| |||||||| |  |||||||| |||||||||||||||||| ||||||  |||||||| || |||| |||||    
T  22724107 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaata 22724193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 44014801 - 44014719
Alignment:
Q  25 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||||  | |||||| ||||||||| || ||||||||    
T  44014801 gtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 44014719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 44237513 - 44237554
Alignment:
Q  54 aacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  44237513 aacagtttcacaagtgcttatgtcagtagataaactcaaata 44237554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 24158492 - 24158429
Alignment:
Q  52 caaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaatataccta 115  Q
    ||||||||||||||||| ||||||||| ||||||  || ||||| || ||||||||||| ||||    
T  24158492 caaacagtttcacaagtacttatgtcagtagataagcttaaataagccaatccaaatatgccta 24158429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 30668973 - 30668930
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaa 66  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||    
T  30668973 atgtcataagttgttttcataaatttttccaaacaatttcacaa 30668930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 27795988 - 27795938
Alignment:
Q  53 aaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatc 103  Q
    ||||||||||||||||||||||| || ||||||  |||||||| |||||||    
T  27795988 aaacagtttcacaagtgcttatgccagtagataagctcaaataagctaatc 27795938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 34254813 - 34254775
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagttt 61  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  34254813 atgtcataaactgttttcataagcttttccaaacagttt 34254775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 41164996 - 41164911
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    |||||||||| ||||||| ||||  ||||||||||| | |||||||| |||||| |  ||||||   ||||||| |||||||||||    
T  41164996 catgtcataaactgttttaataagtttttccaaacattgtcacaagttcttatgccggtagataagttcaaataagctaatccaaa 41164911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 54837040 - 54837003
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagt 59  Q
    |||||||||||||||||||||||| | |||||||||||    
T  54837040 catgtcataagctgttttcataaattcttccaaacagt 54837003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 33894691 - 33894776
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||||||| ||||||||||||| || |  |||||||| |||||||||||||||||||| ||||  |||||||| |||||||||||    
T  33894691 catgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaataagctaatccaaa 33894776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 3836688 - 3836602
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaata 109  Q
    |||||||||||| |||||||||  | | ||||||||||||||||||||||| | || ||||||  |||||||| |  ||||||||||    
T  3836688 atgtcataagctattttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatccaaata 3836602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 19624273 - 19624314
Alignment:
Q  54 aacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  19624273 aacagtttcacaagtgcttatgtcaatagataaactcaaata 19624314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 32410611 - 32410688
Alignment:
Q  29 taagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaa 106  Q
    ||||||||||||||||  | ||| |||||||||||||| |||||||| || ||||||  |||||||| || |||||||    
T  32410611 taagctgttttcataagttattcaaaacagtttcacaaatgcttatgccaatagataagctcaaataagccaatccaa 32410688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 40009544 - 40009593
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    ||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  40009544 tcataagctattttcataaattctaccaaacagtttcacaagtgcttatg 40009593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 25670592 - 25670529
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 85  Q
    ||||||||||| |||||||||||  |||  |||||||| ||||||| |||||||||| ||||||    
T  25670592 catgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagata 25670529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 1710801 - 1710874
Alignment:
Q  29 taagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatc 103  Q
    |||||||||||| ||||||||| |||||||| ||||||| | |||||| | ||||||  |||||||| |||||||    
T  1710801 taagctgttttcttaaactttt-caaacagtgtcacaagggattatgttagtagataagctcaaataagctaatc 1710874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 8094370 - 8094423
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    |||||||||||||||||||||||| | |  |||| ||| |||||||||||||||    
T  8094370 catgtcataagctgttttcataaaatctctcaaatagtctcacaagtgcttatg 8094423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 20547396 - 20547323
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||| ||||| | ||||| || |  |||||||| ||||||||| ||||||||||||||| ||| |||||    
T  20547396 catgtcataggctgtctccataagctctctcaaacagtatcacaagtgtttatgtcattagataaactaaaata 20547323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 32515447 - 32515362
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||||||| ||||||| ||||| || | ||||||||| |||||||||||||||| | |||||| ||||||||| |||||||||||    
T  32515447 catgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaa 32515362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 18327152 - 18327063
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaatata 111  Q
    ||||||||||| |||||||||||  | ||||||| ||| ||| ||||||||||| || ||||||  |||||||| || ||||||||||||    
T  18327152 catgtcataagttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagccaatccaaatata 18327063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 15581318 - 15581404
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaat 108  Q
    ||||||||||| ||||| ||| | || ||||||||| | |||||||||||||||||| ||||||  || ||||| |||| |||||||    
T  15581318 catgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataagctattccaaat 15581404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 3597287 - 3597214
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||| | |||| || |||| ||||||||||| ||||||||| |||| ||||||||||  ||||||||    
T  3597287 catgtcataagttatttttatcaactcttccaaacagtctcacaagtggttatatcattagataacctcaaata 3597214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 7941672 - 7941715
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaa 66  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||    
T  7941672 atgtcataagctgttttcataaattcttccaaacagtctcacaa 7941715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 34536222 - 34536285
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 85  Q
    ||||||||||||||||||||||| |  |  |||||||| ||||||||| |||||||| ||||||    
T  34536222 catgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtcaatagata 34536285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 38867800 - 38867766
Alignment:
Q  61 tcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||| |||||||||||||||||||||||||    
T  38867800 tcacaagtgtttatgtcattagatagactcaaata 38867766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 41638310 - 41638244
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaa 92  Q
    |||||| |||||||||||| || | ||||||||| |||||| |||||||| || ||||||| |||||    
T  41638310 tcataaactgttttcataatctctcccaaacagtctcacaaatgcttatgccagtagataggctcaa 41638244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 4868464 - 4868536
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||| ||||| |||||||| |  |||||||| |||||||||| ||||||| |||||| | |||||||    
T  4868464 catgtcataagttgttt-cataaactctctcaaacagtctcacaagtgcctatgtcaatagataaattcaaata 4868536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 33385593 - 33385656
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 85  Q
    |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||    
T  33385593 catgtcatgagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagata 33385656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 27857423 - 27857495
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    |||||||||| ||||||||||| || | |||||||||||||||||||  ||||||| |||||| |||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaata 27857495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 2732249 - 2732192
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattaga 83  Q
    |||| |||||||| ||||| |||||||||||||| |||||||||||||||||| ||||    
T  2732249 tcattagctgtttccataagcttttccaaacagtctcacaagtgcttatgtcagtaga 2732192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 26559241 - 26559159
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaat 108  Q
    ||||||| |||||||||||  | ||||||||||| |||||| |||||||| || ||| || ||||||||| | ||||||||||    
T  26559241 tcataagttgttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatccaaat 26559159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 283159 - 283213
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgt 76  Q
    |||||||||||||||||| |||   |  |||||||||||||||||||||||||||    
T  283159 catgtcataagctgtttttatacgttcctccaaacagtttcacaagtgcttatgt 283213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 32171387 - 32171333
Alignment:
Q  24 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtca 78  Q
    ||||||||||||||||||||| || |  |||||||| || |||||||||||||||    
T  32171387 tgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatgtca 32171333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 11600880 - 11600819
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattaga 83  Q
    |||||||||||||||||||| ||||| | | ||||||  ||||||||| |||||||| ||||    
T  11600880 catgtcataagctgttttcaaaaactctacaaaacagcctcacaagtgtttatgtcagtaga 11600819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 33887894 - 33887967
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||| |||||||||| | |  |||||| | ||||||||||| |||||| || ||| |||||||||    
T  33887894 catgtcataagctattttcataaattctctcaaacaatgtcacaagtgctaatgtcagtaaataaactcaaata 33887967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 738542 - 738462
Alignment:
Q  27 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    |||||||||||||||||||||||  || ||| | |||||| || |||| ||| ||||||  |||||||| | |||||||||    
T  738542 cataagctgttttcataaactttatcagacaatctcacaaatgtttatctcaatagataagctcaaataagttaatccaaa 738462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 24631906 - 24631866
Alignment:
Q  34 tgttttcataaacttttccaaacagtttcacaagtgcttat 74  Q
    ||||| |||||||| ||||||| ||||||||||||||||||    
T  24631906 tgtttccataaactcttccaaatagtttcacaagtgcttat 24631866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 32976043 - 32976095
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    ||||||||||||||||  |||| || ||||||||||| |||||||| ||||||    
T  32976043 atgtcataagctgtttctataagctcttccaaacagtctcacaagtacttatg 32976095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 33259882 - 33259934
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttat 74  Q
    |||||||| ||| |||| |||||||| |||||||||||||  |||||||||||    
T  33259882 catgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttat 33259934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 9541170 - 9541093
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggcta 100  Q
    |||||||||| |||||||||||||| | |||||||||   ||| |||||||||||| |||||||||||||||| ||||    
T  9541170 atgtcataagatgttttcataaactctcccaaacagtaatacacgtgcttatgtcagtagatagactcaaataagcta 9541093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 2488014 - 2487929
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||| ||||| |||||||||||  | | ||||||||| |||||||||||||||||| |||||  ||||||||| || ||||||||    
T  2488014 catgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaa 2487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 43908701 - 43908650
Alignment:
Q  27 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtca 78  Q
    |||||||||||||| |||||| |  |||||||||||||||||||||||||||    
T  43908701 cataagctgttttcttaaactctctcaaacagtttcacaagtgcttatgtca 43908650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 16162827 - 16162909
Alignment:
Q  25 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||||  | |||||| ||||||||| || ||||||||    
T  16162827 gtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 16162909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 42370367 - 42370301
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagac 88  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||| ||| ||| |||  |||||||||    
T  42370367 catgtcatacgctattttcataaactttcccaaacagtttcacatgtgattacgtcggtagatagac 42370301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 30191147 - 30191074
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||| ||||| ||||| || | ||||||||| | ||||||||||||| || |||||| |||||||||    
T  30191147 catgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaata 30191074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 3953895 - 3953939
Alignment:
Q  51 ccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||    
T  3953895 ccaaacagtttcacaagtgcttatgccagtagataggctcaaata 3953939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 26499785 - 26499853
Alignment:
Q  27 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    |||||||||||||||||| || | | ||| ||| |||||||||||||||||| |||||| | |||||||    
T  26499785 cataagctgttttcataacctctacaaaatagtctcacaagtgcttatgtcagtagataaattcaaata 26499853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 29169941 - 29169889
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    |||||||| ||||||||||||| || | ||||||| |||||||||||||||||    
T  29169941 atgtcatatgctgttttcataagctctcccaaacaatttcacaagtgcttatg 29169889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 39551215 - 39551128
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaata 109  Q
    ||||||||||| ||||| |||||| | | |||||||||||||||| ||||||| ||  ||||||  |||||||| |  ||||||||||    
T  39551215 catgtcataagttgtttccataaattctcccaaacagtttcacaaatgcttatatccgtagataatctcaaataagtcaatccaaata 39551128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 2364455 - 2364410
Alignment:
Q  33 ctgttttcataaacttttccaaacagtttcacaagtgcttatgtca 78  Q
    |||||||||||| || ||||||||||| |||||||| |||||||||    
T  2364455 ctgttttcataatctcttccaaacagtctcacaagtacttatgtca 2364410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 7714310 - 7714379
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||| ||||| || || |||||||||||||| ||||||||| ||||| ||||| |||  ||||||||    
T  7714310 tcataagttgtttccacaagcttttccaaacagtctcacaagtgtttatgacattatataagctcaaata 7714379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 33553304 - 33553389
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||||||||| || ||  |||| || ||||||||||  ||||||||||||||||   ||||||  |||||||| |||||||||||    
T  33553304 catgtcataagttgcttcaataagctcttccaaacagcatcacaagtgcttatgttgatagataagctcaaataagctaatccaaa 33553389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 37353151 - 37353114
Alignment:
Q  49 ttccaaacagtttcacaagtgcttatgtcattagatag 86  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  37353151 ttccaaacagtctcacaagtgcttatgtcagtagatag 37353114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 44236797 - 44236744
Alignment:
Q  54 aacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    |||||| ||||||||||||||| || |||||| ||||||||| | |||||||||    
T  44236797 aacagtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaa 44236744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 7646270 - 7646326
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtca 78  Q
    |||||||||||| ||||||||||| | | ||||||| | |||| |||||||||||||    
T  7646270 catgtcataagcagttttcataaattctcccaaacattgtcactagtgcttatgtca 7646326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 24326099 - 24326167
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaat 94  Q
    |||||| |||||| ||||| || | ||||||||| ||||||||||||||| || ||||||  |||||||    
T  24326099 tcataaactgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 50298580 - 50298642
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 85  Q
    ||||||||||||| |||| ||||  ||||||||||||| |||||||||||||||||| ||||||    
T  50298580 catgtcataagctatttt-ataagtttttccaaacagtctcacaagtgcttatgtcagtagata 50298642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 8328125 - 8328052
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||  ||||||||||| || ||||||||||| ||| ||||||||||| || ||||||  ||||||||    
T  8328125 catgtcataaattgttttcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaata 8328052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 18628555 - 18628486
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||| ||||||||||| || | ||||||||| ||||||||| |||||||| ||||||  ||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 23819153 - 23819197
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaa 66  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||    
T  23819153 catgtcataagctgttttcttaaactcttccaaacagtctcacaa 23819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 25717660 - 25717712
Alignment:
Q  25 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtc 77  Q
    |||||||| ||||| ||||| || ||||||||| |||||||||||||||||||    
T  25717660 gtcataagttgtttccataagctcttccaaacaatttcacaagtgcttatgtc 25717712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 37636187 - 37636119
Alignment:
Q  27 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||  ||||||| | ||||||||||| ||| |||||||||| | |||||| |||||||||    
T  37636187 cataagctgtttctataaactctcccaaacagttttacaggtgcttatgttagtagataaactcaaata 37636119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 2996637 - 2996724
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaata 109  Q
    ||||||||||| ||||||||||| || |  |||||||| ||| |||||||||||||| || |||   ||||||| ||||||| |||||    
T  2996637 catgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaatctaaata 2996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 21157833 - 21157915
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatcca 105  Q
    ||||||||||||||||   ||| || ||||||||||| | |||||||||||||||| |||||   |||||||| || ||||||    
T  21157833 atgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataagcaaatcca 21157915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 55870345 - 55870263
Alignment:
Q  25 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||||| || ||||||||| || |  |||| ||| |||||| || ||||||||||||||| ||||||||| | |||||||||    
T  55870345 gtcataaacttttttcataagctatctcaaagagtctcacaaatgtttatgtcattagataaactcaaataagttaatccaaa 55870263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 7368060 - 7367987
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||||||||||| | || | ||||||||| ||||||| | ||||| |  |||||| |||||||||    
T  7368060 catgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaata 7367987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 10172126 - 10172179
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    ||||||| ||||||||| ||||| || |  ||||||||||||||||||||||||    
T  10172126 catgtcacaagctgtttccataagctatatcaaacagtttcacaagtgcttatg 10172179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 19304990 - 19305083
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaatataccta 115  Q
    ||||||||||||||||| || ||| | | ||| ||| | |||||| ||||||||||| ||||||  |||||||| |  |||||||||| |||||    
T  19304990 catgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagataatctcaaataagtcaatccaaatacaccta 19305083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 22471349 - 22471402
Alignment:
Q  33 ctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatag 86  Q
    ||||||||||||  | | ||||||||| |||||||||||||||||| |||||||    
T  22471349 ctgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatag 22471402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 47970392 - 47970433
Alignment:
Q  54 aacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||||||||||||||| ||||||  ||||||||    
T  47970392 aacagtttcacaagtgcttatgtcagtagataagctcaaata 47970433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 4071946 - 4071994
Alignment:
Q  26 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttat 74  Q
    ||||||||||||||||||| || |  |||||||| ||||||||||||||    
T  4071946 tcataagctgttttcataagctctctcaaacagtctcacaagtgcttat 4071994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 22775581 - 22775633
Alignment:
Q  374 tgacaaggatgtttagcaacaggccttgtgttgaatgcatatgcagtataatc 426  Q
    |||||||| ||||| |  ||||||||||||||||||||||| ||||| |||||    
T  22775581 tgacaagggtgtttggttacaggccttgtgttgaatgcataagcagtgtaatc 22775633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 25434418 - 25434366
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttat 74  Q
    ||||| ||||||||||||| ||| || | | ||||||||||||||||||||||    
T  25434418 catgttataagctgttttcctaagctctcctaaacagtttcacaagtgcttat 25434366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 52754666 - 52754706
Alignment:
Q  25 gtcataagctgttttcataaacttttccaaacagtttcaca 65  Q
    ||||||| |||||||||||| || |||||||||||||||||    
T  52754666 gtcataaactgttttcataagctcttccaaacagtttcaca 52754706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 3970 - 4022
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttat 74  Q
    |||||||| ||| |||| |||||||| ||||||||||| ||||||||||||||    
T  3970 catgtcatgagccgtttccataaactcttccaaacagtctcacaagtgcttat 4022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 10640019 - 10640102
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaataggctaatccaaa 107  Q
    ||||||||||||||||||||||  | | ||||||| | ||||||   ||||||||| |||||| ||||||||| |||||||||||    
T  10640019 atgtcataagctgttttcataagttctcccaaacaatatcacaaaa-cttatgtcagtagataaactcaaataagctaatccaaa 10640102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 1084115 - 1084072
Alignment:
Q  52 caaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||||||||||||||||||||||||| || ||| |||||||||    
T  1084115 caaacagtttcacaagtgcttatgtcagtaaataaactcaaata 1084072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 13244551 - 13244484
Alignment:
Q  28 ataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    ||||| ||||||||||| || ||||||||||| ||| ||||| |||| ||| |||||| |||||||||    
T  13244551 ataagttgttttcataagctcttccaaacagtgtcataagtgtttatttcaatagataaactcaaata 13244484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 16380577 - 16380524
Alignment:
Q  22 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    |||||| |||||||||| |||||||| || |||| |||||||||||| ||||||    
T  16380577 catgtcgtaagctgtttccataaactcttgcaaatagtttcacaagtacttatg 16380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 7907958 - 7908018
Alignment:
Q  34 tgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagatagactcaaat 94  Q
    |||||||||||  | ||||||||||| ||| ||||| |||||| |||||||| ||||||||    
T  7907958 tgttttcataagttcttccaaacagtctcataagtgtttatgttattagataaactcaaat 7908018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 28586771 - 28586719
Alignment:
Q  23 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 75  Q
    |||||||||||| ||| ||||| || | |||||||||||||||| ||||||||    
T  28586771 atgtcataagctatttccataagctctcccaaacagtttcacaaatgcttatg 28586719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 36796688 - 36796640
Alignment:
Q  47 ttttccaaacagtttcacaagtgcttatgtcattagatagactcaaata 95  Q
    |||||||| |||| ||||||||| |||||||||||||||  ||||||||    
T  36796688 ttttccaagcagtctcacaagtgtttatgtcattagataagctcaaata 36796640  T

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