View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_27 (Length: 407)
Name: NF16931_low_27
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 4651222 - 4650834
Alignment:
| Q |
1 |
agtattaaaatttcaattaaaactactagctttggtgagatttagtaggcaaacaacggaacaccgatacttcacagtgaagacatgtctactgcccgac |
100 |
Q |
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| T |
4651222 |
agtattaaaatttcaattaaaactactagctttggtgagatttagtaggcaaacaacggaacaccgatacttcacagtgaagacatgtttactgtccgac |
4651123 |
T |
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| Q |
101 |
atttgttgatatccaacaacaccatgacattgacacgcatactaaattacacttaatcacttccactttctctaattattactggtgtggtgtctagact |
200 |
Q |
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| T |
4651122 |
acttgttgatatccaacaccaccatgacattgacacgcatactaaattacacttaatcacttccactttctctaattattactggtgtggtgtctagact |
4651023 |
T |
|
| Q |
201 |
acattgtttcatacaaccaaaaggtgtcgattcggttgcttttagtcagattaatgagataccactgatgtgatggcagcatacgcattcagaaatcatc |
300 |
Q |
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| T |
4651022 |
acattgtttcatacaaccaaaaggtgttgattcggttgcttttagtcagattaatgagataccactgatgtgatggcagcatacgcattcagaaatcatc |
4650923 |
T |
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| Q |
301 |
gttaaagtgaaccaaatgcaattaatttagagctttgttaaatnnnnnnntctccttttctcttcacagccgcacaagattacaaaaaa |
389 |
Q |
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| T |
4650922 |
gttaaagtgaaccaaatgcaattaatttagagctttgttaaataaaaaaatctccttttctcttcacagccgcacaagattacaaaaaa |
4650834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 103 - 343
Target Start/End: Original strand, 5572099 - 5572342
Alignment:
| Q |
103 |
ttgttgatatccaacaacaccatgacattgacacgcatactaaattacacttaatcacttccactttctctaattattactggtgt-ggtgtctagacta |
201 |
Q |
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| T |
5572099 |
ttgttgatatccaacaccgccatgacattgacacgcgtagttacttacacttaatcacttccaccttccctaattactactggtgtcggtgtctacacta |
5572198 |
T |
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| Q |
202 |
cattgtttcatac-aaccaaaaggtgtcgattcggttgcttttagtcagattaatgagataccactgatgtga--tggcagcatacgcattcagaaatca |
298 |
Q |
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||||||||||||| |||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||| |||||||| ||| ||||||||| || |
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| T |
5572199 |
cattgtttcatacgtaccaaaaggtgtcgattcagttggttttagtcagattgaagagataccactgatgtgatgtggcagcaaacgtattcagaaacca |
5572298 |
T |
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| Q |
299 |
tcgttaaagtgaaccaaatgcaattaatttagagctttgttaaat |
343 |
Q |
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| T |
5572299 |
ttgtt-aagtgaatcaaatgcaattaatttagagcttcgttaaat |
5572342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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