View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_28 (Length: 405)

Name: NF16931_low_28
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_28
NF16931_low_28
[»] chr3 (6 HSPs)
chr3 (112-387)||(44517294-44517570)
chr3 (19-89)||(34137744-34137814)
chr3 (23-124)||(19651925-19652026)
chr3 (14-98)||(36473508-36473592)
chr3 (44-101)||(14195576-14195633)
chr3 (19-98)||(35846593-35846672)
[»] chr4 (13 HSPs)
chr4 (19-124)||(44498251-44498356)
chr4 (19-100)||(42672720-42672801)
chr4 (20-124)||(53924557-53924661)
chr4 (27-124)||(51290298-51290395)
chr4 (19-94)||(47189498-47189573)
chr4 (19-97)||(27064809-27064888)
chr4 (19-97)||(27085913-27085992)
chr4 (19-98)||(39262022-39262101)
chr4 (19-89)||(37334326-37334396)
chr4 (19-87)||(24157071-24157139)
chr4 (19-83)||(25059212-25059276)
chr4 (71-120)||(13862910-13862959)
chr4 (19-94)||(25950333-25950406)
[»] chr2 (5 HSPs)
chr2 (14-124)||(12434180-12434290)
chr2 (19-94)||(7317203-7317278)
chr2 (43-96)||(42255513-42255566)
chr2 (23-89)||(26604111-26604177)
chr2 (19-73)||(36754444-36754498)
[»] chr5 (2 HSPs)
chr5 (14-101)||(16283927-16284014)
chr5 (19-89)||(36036490-36036560)
[»] chr7 (5 HSPs)
chr7 (19-100)||(31350575-31350656)
chr7 (19-98)||(9771786-9771865)
chr7 (19-98)||(38197921-38198000)
chr7 (22-94)||(16888316-16888389)
chr7 (41-89)||(29946806-29946854)
[»] chr8 (3 HSPs)
chr8 (14-124)||(1773443-1773552)
chr8 (44-100)||(1765017-1765073)
chr8 (44-102)||(27530713-27530772)
[»] chr1 (4 HSPs)
chr1 (14-101)||(43177632-43177718)
chr1 (14-101)||(29865952-29866038)
chr1 (41-95)||(8463852-8463905)
chr1 (19-124)||(44127506-44127611)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 112 - 387
Target Start/End: Original strand, 44517294 - 44517570
Alignment:
Q  112 acatgttaacattgtctatttgtttatctagctcggtctaaattgacctacatctaggagatagagcagctctttaatccagtatcattgagtttcttac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  44517294 acatgttaacattgtctatttgtttatctagctcggtctaaattgacctacgtctaggagatagagcaactctttaatccagtatcattgaatttcttac 44517393  T
Q  212 gaaaagatatgagggttgcgagatattaacattcaacaaataattcaatattatacatcttctcgatctc-ttccttgaccaggagactaaatgatttta 310  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||| | |||||||||||||||||| |    
T  44517394 gaaaagatacgagggttgcaagatattaacattcaacaaacaatccaatattatacattttctcgatctctttccttaaacaggagactaaatgatttca 44517493  T
Q  311 cttaccaatgtgttttggtaagccctagtttgtttcattctcacctcatgtcagaattgaagaccaacgtcttatat 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44517494 cttaccaatgtgttttggtaagccctagtttgtttcattctcacctcatgtcagaatcgaagaccaacgtcttatat 44517570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 34137814 - 34137744
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaatt 89  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  34137814 aaattttgattttaaaaaattgaataaagttgaatgcacaacttttaaaacaattatttttattttaaatt 34137744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 19652026 - 19651925
Alignment:
Q  23 tttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatgttcttggatcacatgttaaca 122  Q
    ||||||||||| |||| |||||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||||   |||||  || |||||||||    
T  19652026 tttgactttaataaattgaataaagttgaatacacaacttttaagataattatttctattttaaattccttaacatatacccttggggcatatgttaaca 19651927  T
Q  123 tt 124  Q
    ||    
T  19651926 tt 19651925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 36473508 - 36473592
Alignment:
Q  14 gaaccaaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacat 98  Q
    |||| ||| |||||||||||||| |  |||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||    
T  36473508 gaacaaaactttgactttaaaaagttaaataaagttgaatgcacaacttttaagaaaattatttctattttaaatttcttaacat 36473592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 14195633 - 14195576
Alignment:
Q  44 aaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatg 101  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  14195633 aaagttgaatgcacaacttttaagacaattatttctattttaaattccttagcatatg 14195576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 35846593 - 35846672
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacat 98  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||| | |||||| ||||| |||||||||  |||||||    
T  35846593 aaattttaacttttaaaaattgaataaagttgaatgcacagcttttgagacaattgtttcttttttaaattttttaacat 35846672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 44498356 - 44498251
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatgttcttggatcacatgtt 118  Q
    ||||||| |||||||||| | ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||  ||||||||    
T  44498356 aaattttaactttaaaaagttgaataaagttgaatgcacaacttttaagacaattatttttattttaaattccttaacatatgctcttgggacacatgtt 44498257  T
Q  119 aacatt 124  Q
    ||||||    
T  44498256 aacatt 44498251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 42672801 - 42672720
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatat 100  Q
    |||||||||||||||||| | |||||||||||||||||||  |||||| ||||||||||||||||||||||| ||| |||||    
T  42672801 aaattttgactttaaaaagttgaataaagttgaatgcacaatttttaagacaattatttctattttaaattctttagcatat 42672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 53924661 - 53924557
Alignment:
Q  20 aattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatgttcttggatcacatgtta 119  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||  || |||||| |||||||||||||||| ||| ||  |||||  |||||||||    
T  53924661 aattttgactttaaaaaattgaatagagttgaatgcacaacttttaaggcatttatttttattttaaattccttagcatgtgcccttggggcacatgtta 53924562  T
Q  120 acatt 124  Q
    |||||    
T  53924561 acatt 53924557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 51290298 - 51290395
Alignment:
Q  27 actttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatgttcttggatcacatgttaacatt 124  Q
    |||||||||| |  |||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||  |||||| ||| |  ||||||||||||||    
T  51290298 actttaaaaagtttaataaagttgaatgcacaacttttaagacaattatttttattttaaatttcttagtatatgtccttagggcacatgttaacatt 51290395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 47189498 - 47189573
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattcctta 94  Q
    ||||||||||||| |||| | ||||||||||||||||||| ||||| | |||| ||||||||||||||||| ||||    
T  47189498 aaattttgacttttaaaagttgaataaagttgaatgcacaacttttgagacaactatttctattttaaatttctta 47189573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 27064809 - 27064888
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttcta-ttttaaattccttaaca 97  Q
    |||| ||||||||||||| |  ||||||||||||||||||  ||||||||||||||||| || ||||||||| |||||||    
T  27064809 aaatattgactttaaaaagtttaataaagttgaatgcacaatttttaaaacaattatttttatttttaaatttcttaaca 27064888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 27085913 - 27085992
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttcta-ttttaaattccttaaca 97  Q
    |||| ||||||||||||| |  ||||||||||||||||||  ||||||||||||||||| || ||||||||| |||||||    
T  27085913 aaatattgactttaaaaagtttaataaagttgaatgcacaatttttaaaacaattatttttatttttaaatttcttaaca 27085992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 39262101 - 39262022
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacat 98  Q
    ||||||||| ||| |||||| |||||||||||||||||||  |||||| |||||| ||||| |||||||||  |||||||    
T  39262101 aaattttgatttttaaaaattgaataaagttgaatgcacaatttttaagacaattgtttcttttttaaattttttaacat 39262022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 37334396 - 37334326
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaatt 89  Q
    ||||||| ||||| |||| | ||||||||||||||||| | | ||||||| ||||||||||||||||||||    
T  37334396 aaattttaacttttaaaagttgaataaagttgaatgcaaaacctttaaaataattatttctattttaaatt 37334326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 24157071 - 24157139
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaa 87  Q
    |||||||||| ||||||| | |||||| ||| |||||||| ||||||| ||| ||||||||||||||||    
T  24157071 aaattttgacattaaaaagttgaataaggttaaatgcacatcttttaagacacttatttctattttaaa 24157139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 25059276 - 25059212
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattt 83  Q
    ||||||||||||| |||| | ||||||||||||||| ||| ||||| | |||||| |||||||||    
T  25059276 aaattttgacttttaaaagttgaataaagttgaatgtacaacttttgagacaattgtttctattt 25059212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 13862910 - 13862959
Alignment:
Q  71 attatttctattttaaattccttaacatatgttcttggatcacatgttaa 120  Q
    ||||||||||||||||||||| |||||||||  |||||  ||||||||||    
T  13862910 attatttctattttaaattccctaacatatgcccttggggcacatgttaa 13862959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 25950333 - 25950406
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattcctta 94  Q
    ||||||| |||||||||  | ||||||| ||||||||||| |||   | |||||||||||||||||||||| ||||    
T  25950333 aaattttaactttaaaaggttgaataaaattgaatgcacaacttg--agacaattatttctattttaaatttctta 25950406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 12434180 - 12434290
Alignment:
Q  14 gaaccaaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatgttcttggatcac 113  Q
    |||| |||||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||  |||||  |||    
T  12434180 gaacaaaattttgactttaaaaagttgaataaagttgaatgcacaacttttaagacaattatttatattttaaattcattaacatatgcccttggggcac 12434279  T
Q  114 atgttaacatt 124  Q
    |||||| ||||    
T  12434280 atgttagcatt 12434290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 7317278 - 7317203
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattcctta 94  Q
    |||||||||||||||||| | ||| | | ||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  7317278 aaattttgactttaaaaagttgaaaagaattgaatgcacaacttttaagacatttatttctattttaaattcctta 7317203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 42255566 - 42255513
Alignment:
Q  43 taaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaac 96  Q
    |||| |||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  42255566 taaaattgaatgcacaatttttaaaacaattatttatattttaaattccttaac 42255513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 26604177 - 26604111
Alignment:
Q  23 tttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaatt 89  Q
    ||||||||| |||| | ||||||  ||||| ||||| ||||||| ||| ||||||||||||||||||    
T  26604177 tttgactttgaaaagttgaataagattgaacgcacaacttttaatacagttatttctattttaaatt 26604111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 36754444 - 36754498
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaatt 73  Q
    ||||||||||||| |||| | ||||||||||||||||||| ||||| | ||||||    
T  36754444 aaattttgacttttaaaagttgaataaagttgaatgcacaacttttgagacaatt 36754498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 16283927 - 16284014
Alignment:
Q  14 gaaccaaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatg 101  Q
    |||| |||||||||||||||||| | |||||||| |||||||||| ||||||| ||||||||||||||||||||||  ||||||||||    
T  16283927 gaacaaaattttgactttaaaaagttgaataaagatgaatgcacaacttttaagacaattatttctattttaaattttttaacatatg 16284014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 36036560 - 36036490
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaatt 89  Q
    ||||||||| ||| |||| | |||||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  36036560 aaattttgatttttaaaagttgaataaagttgaatacacaacttttaaaacaattgtttcttttttaaatt 36036490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 31350575 - 31350656
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatat 100  Q
    |||||||||||| ||||||| |||||||||| |||||| |  |||||| | |||||||||||||||||||||||||||||||    
T  31350575 aaattttgacttcaaaaaattgaataaagttaaatgcagaatttttaagataattatttctattttaaattccttaacatat 31350656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 9771786 - 9771865
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacat 98  Q
    ||||||||||||| |||| | |||||||||| |||||||| ||||| | |||  | ||||||||||||||| ||||||||    
T  9771786 aaattttgacttttaaaagttgaataaagttaaatgcacaacttttgagacatatgtttctattttaaatttcttaacat 9771865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 38198000 - 38197921
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacat 98  Q
    ||||||||  |||||||| | ||||| | ||||||| ||| ||||||| ||| |||||| ||||||||||||||||||||    
T  38198000 aaattttgtttttaaaaagttgaatagatttgaatgtacaacttttaagacatttatttttattttaaattccttaacat 38197921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 16888389 - 16888316
Alignment:
Q  22 ttttgactttaaaaaatggaata-aagttgaatgcacagcttttaaaacaattatttctattttaaattcctta 94  Q
    |||||||||| |||| | ||||| |||||||||| ||| ||||||| | |||||||| ||||||||||||||||    
T  16888389 ttttgacttttaaaagttgaatacaagttgaatgtacaacttttaagagaattatttttattttaaattcctta 16888316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 29946854 - 29946806
Alignment:
Q  41 aataaagttgaatgcacagcttttaaaacaattatttctattttaaatt 89  Q
    |||||||||||||||| |  |||| |||||||||||| |||||||||||    
T  29946854 aataaagttgaatgcataattttttaaacaattatttttattttaaatt 29946806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 1773552 - 1773443
Alignment:
Q  14 gaaccaaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatgttcttggatcac 113  Q
    |||| |||||||||||||||||| | ||||| |  |||||||||| | ||||| ||| |||||||||||||||||| |||| ||||||| |||||| |||    
T  1773552 gaacaaaattttgactttaaaaagttgaatagaaatgaatgcacaacctttaagacatttatttctattttaaatt-cttagcatatgtccttggagcac 1773454  T
Q  114 atgttaacatt 124  Q
    |||||| ||||    
T  1773453 atgttagcatt 1773443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 1765073 - 1765017
Alignment:
Q  44 aaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatat 100  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  1765073 aaagttgaatgcacaacttttaagacatttatttctattttaaattccttaacatat 1765017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 27530713 - 27530772
Alignment:
Q  44 aaagttgaatg-cacagcttttaaaacaattatttctattttaaattccttaacatatgt 102  Q
    ||||||||||| |||| ||||||| ||||||| |||||||||||||| ||||||||||||    
T  27530713 aaagttgaatgacacaacttttaagacaattaattctattttaaatttcttaacatatgt 27530772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 43177718 - 43177632
Alignment:
Q  14 gaaccaaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatg 101  Q
    |||| |||||||||||||||||  || |||||  ||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||    
T  43177718 gaacaaaattttgactttaaaagttg-aataagattgaatgcacaacttttaatacatttatttctattttaaattccttaatatatg 43177632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 29866038 - 29865952
Alignment:
Q  14 gaaccaaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatg 101  Q
    |||| ||||||| |||||||||  || |||||| ||||||| ||| ||||||| ||| |||||||||||||||||||||||| |||||    
T  29866038 gaacaaaattttaactttaaaagttg-aataaaattgaatgtacaacttttaatacatttatttctattttaaattccttaatatatg 29865952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 8463852 - 8463905
Alignment:
Q  41 aataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaa 95  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||    
T  8463852 aataaagttgaatgcacaactttt-aaacatttatttctattttaaatttcttaa 8463905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 44127506 - 44127611
Alignment:
Q  19 aaattttgactttaaaaaatggaataaagttgaatgcacagcttttaaaacaattatttctattttaaattccttaacatatgttcttggatcacatgtt 118  Q
    ||||||||||||| |||| | |||||||||||||| ||||  |||| | |||| | ||||||||||||||| |||| ||| ||  |||||  ||||||||    
T  44127506 aaattttgacttttaaaagttgaataaagttgaatacacaattttttagacaaatgtttctattttaaatttcttagcatgtgcccttgggacacatgtt 44127605  T
Q  119 aacatt 124  Q
    | ||||    
T  44127606 atcatt 44127611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University