View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_3 (Length: 818)
Name: NF16931_low_3
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 35450567 - 35450182
Alignment:
| Q |
18 |
atatgagcccgaaagaagtagcgaactcactactgaatgaagcaaaaatagagcctaaattcactgaactaggtaatgcagtttctttcttctgnnnnnn |
117 |
Q |
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| T |
35450567 |
atatgagcccgaaagaagtagcgaactcactactgaatgaagcaaaaatagagcctaaattcactgaactaggtaatgcagtttctttcttctgtttttt |
35450468 |
T |
|
| Q |
118 |
ngtctcatctttacttggcctt------------agactttttatgtattatgctacagtatctaacttgattgaaatttcagttgttatatttgtaata |
205 |
Q |
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| T |
35450467 |
-gtctcatctttacttggccttggccttggccttagactttttatgtattatgctacagtatctaacttgattgaaatttcagttgttatatttgtaata |
35450369 |
T |
|
| Q |
206 |
ttcatttgattcttgatattttgttctgctaaataaagaaatcatagattcatgaattatgattaaggtctagttataatttagctatactttttccatg |
305 |
Q |
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| T |
35450368 |
ttcatttgattcttgatattttgttctgctgaataaagaaatcaaagattcatgaattatgattaaggtctagttataatttagctatcctttttccatg |
35450269 |
T |
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| Q |
306 |
tgcagagtttaaccatacagttgtagtacaaaattggggaaattagtttagtttgtgtcctccccaaaaccctttatgcaagatatg |
392 |
Q |
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| T |
35450268 |
tgcagagtttaaccatacagttgtagtacaaaattggggaaattagtttagtttgtgtcctccccaaaaccctttatcaaagatatg |
35450182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 746 - 805
Target Start/End: Complemental strand, 35450161 - 35450102
Alignment:
| Q |
746 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcatttca |
805 |
Q |
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| T |
35450161 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcatttca |
35450102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 658 - 710
Target Start/End: Complemental strand, 51576277 - 51576225
Alignment:
| Q |
658 |
tgttacatgttttaattaattttcaattcttgtttaattagtctcacattccc |
710 |
Q |
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| T |
51576277 |
tgttacatgttttaattaattttcaattcttgtttacttaatctcacattccc |
51576225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Complemental strand, 51576390 - 51576335
Alignment:
| Q |
513 |
agattaaagaaactagcttatttgctttatttattaggtgacttcaatcaatggct |
568 |
Q |
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| T |
51576390 |
agattaaagaaattagattaattgctttatttatttagtgacttcaatcagtggct |
51576335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 707
Target Start/End: Original strand, 1864474 - 1864529
Alignment:
| Q |
652 |
cataactgttacatgttttaattaattttcaattcttgtttaattagtctcacatt |
707 |
Q |
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| T |
1864474 |
cataaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacatt |
1864529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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