View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_30 (Length: 381)

Name: NF16931_low_30
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_30
NF16931_low_30
[»] chr1 (7 HSPs)
chr1 (1-360)||(51808369-51808729)
chr1 (1-98)||(51804420-51804516)
chr1 (185-259)||(51804639-51804713)
chr1 (198-254)||(51773139-51773195)
chr1 (167-241)||(51790337-51790411)
chr1 (1-29)||(51780651-51780679)
chr1 (197-229)||(51780779-51780811)
[»] scaffold0710 (1 HSPs)
scaffold0710 (1-41)||(7295-7335)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 51808369 - 51808729
Alignment:
Q  1 actttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaatttaagatataacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51808369 actttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaatttaagatataacat 51808468  T
Q  101 acaacatgcaacgaaattacagttgttatt-gacctgagattgaccgttgaaaatagatgcacacggttcattcatatcgtatcagatgcaaactttgct 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  51808469 acaacatgcaacgaaattacagttgttatttgacctgagattgaccgttgaaaatagatgcacatggttcattcatatcgtatcagatgcaaattttgct 51808568  T
Q  200 gtcaacatattgttgataaagttgttgatgcaagagatcattcggcgcgtgctttttaacaaaaccccatgccgtgactgttagtatagggaccgtatcg 299  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  51808569 gtcaacatattgttgataaagttattgatgcaagagatcattcggcgcgtgctctttaacaaaaccccatgccatgactgttagtatagggaccgtatcg 51808668  T
Q  300 gcagaaagtattcattcatcaacagagaggtctattttgaggtcaatgaagggagattatt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51808669 gcagaaagtattcattcatcaacagagaggtctattttgaggtgaatgaagggagattatt 51808729  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 51804420 - 51804516
Alignment:
Q  1 actttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaatttaagatataac 98  Q
    |||||||||||| |||||||||||||||||||| || |  |||||||||| |||||||||||| |||| ||||||  | |||||||||||||||||||    
T  51804420 actttcaaatatatcgagcaggcaatttctcaagcatgcttagatgaatagaacaagtccactcttagagcataa-cataaagaatttaagatataac 51804516  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 51804639 - 51804713
Alignment:
Q  185 gatgcaaactttgctgtcaacatattgttgataaagttgttgatgcaagagatcattcggcgcgtgctttttaac 259  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||| ||||    
T  51804639 gatgtaaacttggctgtcaacatattgttgataaagttgttaatgcaagagatcatttggcatgtgctttgtaac 51804713  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 51773139 - 51773195
Alignment:
Q  198 ctgtcaacatattgttgataaagttgttgatgcaagagatcattcggcgcgtgcttt 254  Q
    ||||||||||||||||||||||||||| |||  | ||||||||| | ||||||||||    
T  51773139 ctgtcaacatattgttgataaagttgtggataaacgagatcatttgacgcgtgcttt 51773195  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 51790337 - 51790411
Alignment:
Q  167 ttcattcatatcgtatcagatgcaaactttgctgtcaacatattgttgataaagttgttgatgcaagagatcatt 241  Q
    |||||||||||||   | |||||| || | ||| ||||||||||||||||||||| || ||||||||| ||||||    
T  51790337 ttcattcatatcggcacggatgcagacatggctttcaacatattgttgataaagtagtagatgcaagaaatcatt 51790411  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 51780651 - 51780679
Alignment:
Q  1 actttcaaatatctcgagcaggcaatttc 29  Q
    |||||||||||||||||||||||||||||    
T  51780651 actttcaaatatctcgagcaggcaatttc 51780679  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 51780779 - 51780811
Alignment:
Q  197 gctgtcaacatattgttgataaagttgttgatg 229  Q
    |||||||||||||||||||||||||||| ||||    
T  51780779 gctgtcaacatattgttgataaagttgtggatg 51780811  T

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Target: scaffold0710 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7295 - 7335
Alignment:
Q  1 actttcaaatatctcgagcaggcaatttctcaatcaagagt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7295 actttcaaatatctcgagcaggcaatttctcaatcaagagt 7335  T

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