View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_31 (Length: 375)
Name: NF16931_low_31
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 18044702 - 18045052
Alignment:
| Q |
17 |
acatcttggtgtcttatactaactaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaag |
116 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18044702 |
acatcttggtgtgttatactgactaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaag |
18044801 |
T |
|
| Q |
117 |
gccccgatagtgttgaacttacgagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattc-----aatcaacacttgttcgct |
211 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18044802 |
gccccgatagtgttgaatttacgagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatataatcaacacttgttcgct |
18044901 |
T |
|
| Q |
212 |
tgcttccccgttgatttcccagaatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18044902 |
tgcttccccgttgatttcccagaatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgct |
18045001 |
T |
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| Q |
312 |
aataatttagacgatgcttccactgctaattgtaaatccttctcggtattc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18045002 |
aataatttagacgatgcttccactgctaattgtaaatccttctcagtattc |
18045052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 48369934 - 48369596
Alignment:
| Q |
17 |
acatcttggtgtcttatactaactaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaag |
116 |
Q |
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|||||||||||| ||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48369934 |
acatcttggtgttttatactgactaacagctgttcctaatccaaggtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaag |
48369835 |
T |
|
| Q |
117 |
gccccgatagtgttgaacttacgagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgctt |
216 |
Q |
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|| || |||| ||||| ||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| | ||||| ||| ||||||| |
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| T |
48369834 |
gctccaatagcgttgactttacgagaactagtgtagcctgcatcgacaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgctt |
48369735 |
T |
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| Q |
217 |
ccccgttgatttcccagaatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataa |
316 |
Q |
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||||||||||||||||||| |||||||||| ||| |||||||| |||||||| |||||||||||||| ||||| ||||||| |||||||||| ||||||| |
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| T |
48369734 |
ccccgttgatttcccagaagattacatagttccctggctctttggataaatcaacatggcttgtgaactcaacaacttccaatttctcttctactaataa |
48369635 |
T |
|
| Q |
317 |
tttagacgatgcttccactgctaattgtaaatccttctc |
355 |
Q |
| |
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||| | || ||||||||| ||||| |||||||| ||||| |
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|
| T |
48369634 |
ttttgccgctgcttccacggctaactgtaaatctttctc |
48369596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 13978952 - 13979254
Alignment:
| Q |
19 |
atcttggtgtcttatactaactaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggc |
118 |
Q |
| |
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|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
13978952 |
atcttgctgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttggaatgttcctttcccaacaactcggagttctaaggc |
13979051 |
T |
|
| Q |
119 |
cccgatagtgttgaacttacgagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttcc |
218 |
Q |
| |
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||| ||||||||| ||| || ||| | |||| || ||| ||||||||||||||||||| |||||||||| | |||||| || ||| |||||||| |
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| T |
13979052 |
cccaatagtgttggccttgcgcgaaaaactgtaggatggatcagtgaaagacttatccaaacaattgcaacatttactcaacaattcttcacttgcttca |
13979151 |
T |
|
| Q |
219 |
ccgttgatttcccagaatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatt |
318 |
Q |
| |
|
|| | |||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
13979152 |
ccactaatttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaattcctcttctgctaataatt |
13979251 |
T |
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| Q |
319 |
tag |
321 |
Q |
| |
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||| |
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| T |
13979252 |
tag |
13979254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 10241557 - 10241606
Alignment:
| Q |
63 |
taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
112 |
Q |
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||||| ||||||||||| || ||||||||||||| ||||| ||||||||| |
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| T |
10241557 |
taatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttc |
10241606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 10263528 - 10263577
Alignment:
| Q |
63 |
taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
112 |
Q |
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||||| ||||||||||| || ||||||||||||| ||||| ||||||||| |
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| T |
10263528 |
taatgctcaagaatcttctggaatgttcctttccgaacaagtcggagttc |
10263577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 10271680 - 10271749
Alignment:
| Q |
43 |
cagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
112 |
Q |
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|||||| ||||||||| | ||||| ||||||||||| || ||||||||||| | ||||| ||||||||| |
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| T |
10271680 |
cagatgctcctaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttc |
10271749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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