View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16931_low_34 (Length: 371)
Name: NF16931_low_34
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_34 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 8926731 - 8927069
Alignment:
| Q |
17 |
gatcaattcaaagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaata |
116 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926731 |
gatcagttcaaagaaaagctaggcgaaggagctcatggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaata |
8926830 |
T |
|
| Q |
117 |
cagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926831 |
cagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt |
8926930 |
T |
|
| Q |
217 |
ttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattg |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8926931 |
ttatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacaacaaggatgttttccttggttgggacttattg |
8927030 |
T |
|
| Q |
317 |
caacaaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8927031 |
caacaaattgctctaggcattgccaatgggattgagtat |
8927069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 8939154 - 8939495
Alignment:
| Q |
14 |
acagatcaattcaaagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagta |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||| |||||||||||||||| |
|
|
| T |
8939154 |
acagatcaattcaaagaaaagctaggggaaggagctcatggagctgtctataaaggtaaattatcgagtcaaattcttgttgccgtgaagatgcttagta |
8939253 |
T |
|
| Q |
114 |
atacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatgg |
213 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8939254 |
ataccgagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatgg |
8939353 |
T |
|
| Q |
214 |
attttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggactta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
8939354 |
attttatcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggactta |
8939453 |
T |
|
| Q |
314 |
ttgcaacaaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8939454 |
ttgcaacaaattgctcttggcattgccaatgggattgagtat |
8939495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 8962084 - 8962422
Alignment:
| Q |
17 |
gatcaattcaaagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaata |
116 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||||| ||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
8962084 |
gatcaattcaaggaaaagctgggcgaaggagctcatggagctgtctacaaaggtaaattatcgagtcaaattcttgttgctgtgaagatgcttaataata |
8962183 |
T |
|
| Q |
117 |
cagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt |
216 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
8962184 |
cagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggatt |
8962283 |
T |
|
| Q |
217 |
ttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8962284 |
ttatcgtgctttggtttatgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttattg |
8962383 |
T |
|
| Q |
317 |
caacaaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
8962384 |
caacagattgctctaggcattgccaatggaattgagtat |
8962422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 41 - 355
Target Start/End: Original strand, 9299898 - 9300212
Alignment:
| Q |
41 |
gaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttca |
140 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||| | ||||||| |||||||| |||||||| | ||| | || |||||||||| ||||||| |
|
|
| T |
9299898 |
gaaggagctcatggagctgtttacaaaggtaaattatcaagtcaaattcaagttgctgttaagatgctcaataacgctgaaggagatgggaaggagttca |
9299997 |
T |
|
| Q |
141 |
taaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactt |
240 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| ||| | |||||||| || ||||||||||||||||||||||||||| |||||||| | || |||||||| |
|
|
| T |
9299998 |
taaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgactt |
9300097 |
T |
|
| Q |
241 |
tttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgcc |
340 |
Q |
| |
|
||||| | |||||||||||| || ||||||||| | || || ||| ||| ||||||||| ||||| ||||||||||||||||||||||| ||| |
|
|
| T |
9300098 |
cttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcc |
9300197 |
T |
|
| Q |
341 |
aatgggattgagtat |
355 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
9300198 |
aatggaatagagtat |
9300212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 27 - 355
Target Start/End: Complemental strand, 9242857 - 9242529
Alignment:
| Q |
27 |
aagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggaga |
126 |
Q |
| |
|
|||| ||| |||| ||||| |||| |||||||| |||||||||||||||||||| |||||| | || || |||||||| |||| |||| |||||| ||| |
|
|
| T |
9242857 |
aagataagataggcgaagggactcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattcttaataatgcagaggaaga |
9242758 |
T |
|
| Q |
127 |
tgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgct |
226 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||| || || |||||| | ||||| ||||| |||||||||| || || ||||||||| |||||| |
|
|
| T |
9242757 |
tgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttggctactgcgcggatggatttcgccgtgct |
9242658 |
T |
|
| Q |
227 |
ttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattgcaacaaattg |
326 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||| || ||||||||||| || ||| ||| |||| ||||||||| ||||| |||||| |||||| |
|
|
| T |
9242657 |
ttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgatttccttggatgggataagttgcaaaaaattg |
9242558 |
T |
|
| Q |
327 |
ctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
||||||| || |||||||| ||||||||| |
|
|
| T |
9242557 |
ctctaggtatagccaatggcattgagtat |
9242529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 355
Target Start/End: Complemental strand, 9257811 - 9257498
Alignment:
| Q |
41 |
gaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttca |
140 |
Q |
| |
|
||||||||||| |||||||| || ||||| || ||||| | ||||||| | |||||||| |||||| | | ||| |||| |||||||||| ||||||| |
|
|
| T |
9257811 |
gaaggagctcaaggagctgtttacaaaggcaa-ttatcaagtcaaattctagttgctgttaagatgatcaataacgcagaaggagatgggaaggagttca |
9257713 |
T |
|
| Q |
141 |
taaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactt |
240 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||| | |||| ||| || ||||||||||||||||||||||||||| |||||||| | || |||||||| |
|
|
| T |
9257712 |
taaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgactt |
9257613 |
T |
|
| Q |
241 |
tttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgcc |
340 |
Q |
| |
|
||||| |||||||||||||| || ||||||||| | || || | | ||| ||||||||| |||||| ||||||||||||||||||||||| ||| |
|
|
| T |
9257612 |
cttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaagatagtttccttggatgggacaagttgcaacaaattgctctaggcatagcc |
9257513 |
T |
|
| Q |
341 |
aatgggattgagtat |
355 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
9257512 |
aatggaatcgagtat |
9257498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 9364181 - 9364515
Alignment:
| Q |
21 |
aattcaaagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacaga |
120 |
Q |
| |
|
|||| ||||| ||| |||| ||||| ||||| |||||||| ||||||||||| |||||||| |||||| | || || |||||||| |||| ||||||| | |
|
|
| T |
9364181 |
aatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatcgaaccaaattctagtagccgtgaagattcttaataatacaaa |
9364280 |
T |
|
| Q |
121 |
gggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttat |
220 |
Q |
| |
|
|| |||||||| || ||||||||||| |||||||| ||||| ||||| || ||| | ||||| ||||| ||||||||||| || || ||||| ||| | |
|
|
| T |
9364281 |
ggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttggcttctgcgcagatggttttcgt |
9364380 |
T |
|
| Q |
221 |
cgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattgcaac |
320 |
Q |
| |
|
|||||||| || ||||||||||| | |||||||||||||| || ||||||||| | | ||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
9364381 |
cgtgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaa |
9364480 |
T |
|
| Q |
321 |
aaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||| |
|
|
| T |
9364481 |
aaattgctctaggcatagcaaatggtattgagtat |
9364515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 9337322 - 9337656
Alignment:
| Q |
21 |
aattcaaagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacaga |
120 |
Q |
| |
|
|||| ||||| ||| |||| ||||| ||||| |||||||| ||||||||||| |||||||| |||||| | || || |||||||| |||| ||||||| | |
|
|
| T |
9337322 |
aatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatcgaaccaaattctagtagccgtgaagattcttaataatacata |
9337421 |
T |
|
| Q |
121 |
gggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttat |
220 |
Q |
| |
|
|| |||||||| || ||||||||||| |||||||| ||||| ||||| || ||| | ||||| ||||| ||||| ||||| || || ||||| ||| | |
|
|
| T |
9337422 |
ggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcggcttctgcgcagatggttttcgt |
9337521 |
T |
|
| Q |
221 |
cgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattgcaac |
320 |
Q |
| |
|
|||||||| || ||||||||||| | |||||||||||||| || ||||||||| | | ||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
9337522 |
cgtgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaa |
9337621 |
T |
|
| Q |
321 |
aaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||| |
|
|
| T |
9337622 |
aaattgctctaggcatagcaaatggtattgagtat |
9337656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 355
Target Start/End: Complemental strand, 9467037 - 9466723
Alignment:
| Q |
41 |
gaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttca |
140 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| || | |||||| | ||||| || |||||||| | ||| || ||||||||||| | ||||||| |
|
|
| T |
9467037 |
gaaggagctcatggagctgtttacaaaggtaaattgtcaagccaaattctcgttgccgttaagatgctcaataacactgagggagatggtaaggagttca |
9466938 |
T |
|
| Q |
141 |
taaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactt |
240 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||| || ||||||||||| || || ||||||||||| || | ||| || || || | |
|
|
| T |
9466937 |
taaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggattttaccgcggtttagtctacgatct |
9466838 |
T |
|
| Q |
241 |
tttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgcc |
340 |
Q |
| |
|
||| || | |||||| ||||| || || ||||| |||| ||| ||| |||| ||| ||||| |||||| |||||||||||||||||||||| ||| |
|
|
| T |
9466837 |
ttttccaagtggttctttgcagaaatttctttctccaccaaacaacaaagatgcttttcttggatgggacacgctgcaacaaattgctctaggcatagcc |
9466738 |
T |
|
| Q |
341 |
aatgggattgagtat |
355 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
9466737 |
aatggaattgagtat |
9466723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 270
Target Start/End: Complemental strand, 9420994 - 9420760
Alignment:
| Q |
36 |
taggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtga |
135 |
Q |
| |
|
|||||||||||||||| || || || | |||||||||||||| ||| ||||| | || |||||||||||||||| || || ||||| ||||| | || |
|
|
| T |
9420994 |
taggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaaga |
9420895 |
T |
|
| Q |
136 |
gttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttat |
235 |
Q |
| |
|
|||||| || || ||| | ||||||||||||| ||||| | ||||||||||| ||| |||| ||||| |||||||||| || |||||| | |||||| |
|
|
| T |
9420894 |
gttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttat |
9420795 |
T |
|
| Q |
236 |
gactttttcccgaatggttcgttgcaaaacttcat |
270 |
Q |
| |
|
| || || || ||||||||||| || |||||||| |
|
|
| T |
9420794 |
aatttctttccaaatggttcgttacagaacttcat |
9420760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 270
Target Start/End: Complemental strand, 9438077 - 9437843
Alignment:
| Q |
36 |
taggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtga |
135 |
Q |
| |
|
|||||||||||||||| || || || | |||||||||||||| ||| ||||| | || |||||||||||||||| || || ||||| ||||| | || |
|
|
| T |
9438077 |
taggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatgaaattcttgtggctgtgaagatgcttaaaaacaccgagggcgatggaaaaga |
9437978 |
T |
|
| Q |
136 |
gttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttat |
235 |
Q |
| |
|
|||||| || || ||| | ||||||||||||| ||||| | ||||||||||| ||| |||| ||||| |||||||||| || |||||| | |||||| |
|
|
| T |
9437977 |
gttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttat |
9437878 |
T |
|
| Q |
236 |
gactttttcccgaatggttcgttgcaaaacttcat |
270 |
Q |
| |
|
| || || || ||||||||||| || |||||||| |
|
|
| T |
9437877 |
aatttctttccaaatggttcgttacagaacttcat |
9437843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 8979516 - 8979321
Alignment:
| Q |
29 |
gaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatg |
128 |
Q |
| |
|
||||| ||||| ||||||||||||||| || | |||||| ||| | || ||| | ||| |||||||||||||||| || | |||||||| ||||| | |
|
|
| T |
8979516 |
gaaaaactaggagaaggagctcacggaaaagtatttaaaggaaaactctcaaatgagattctggttgctgtgaagattctcaacaatacagaaggagacg |
8979417 |
T |
|
| Q |
129 |
ggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtg |
224 |
Q |
| |
|
||| |||||||| | || ||||||| ||||||||||||||| || | ||||||||||| ||||||||||| ||||| || ||| || |||||| |
|
|
| T |
8979416 |
ggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaattcatcgtg |
8979321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 9377565 - 9377790
Alignment:
| Q |
84 |
aaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgt |
183 |
Q |
| |
|
||||| |||||||||||||| |||| | | | ||| | |||||||| | || ||||| ||||| || |||||||||||||||| |||||| | ||||| |
|
|
| T |
9377565 |
aaattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgt |
9377664 |
T |
|
| Q |
184 |
tgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgac |
283 |
Q |
| |
|
|||||| ||||| || || ||||| |||||||| | |||||| | || ||||| || || || ||||| ||||||||||| ||| | | |||| || |
|
|
| T |
9377665 |
tgttcgcttgctcggattctgtgctgatggattccaccgtgctcttgtctatgatttctttccaaatgggtcgttgcaaaaattcttggcgccaccggag |
9377764 |
T |
|
| Q |
284 |
agcaaggatgttttccttggttggga |
309 |
Q |
| |
|
| ||| |||||||| ||||||||||| |
|
|
| T |
9377765 |
aacaatgatgtttttcttggttggga |
9377790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 9236600 - 9236484
Alignment:
| Q |
152 |
ggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatg |
251 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| || || || |||||||| |||||||| | |||||| | || ||||| || || ||||||| |
|
|
| T |
9236600 |
ggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccaccgtgctcttgtctatgatttctttccgaatg |
9236501 |
T |
|
| Q |
252 |
gttcgttgcaaaacttc |
268 |
Q |
| |
|
| || ||||| |||||| |
|
|
| T |
9236500 |
gctccttgcagaacttc |
9236484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 8862030 - 8861931
Alignment:
| Q |
115 |
tacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatgga |
214 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| ||||||| |||||| |||||||| || | || || ||||| ||||||||||| || || |||||| |
|
|
| T |
8862030 |
tacagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgga |
8861931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 15910716 - 15910382
Alignment:
| Q |
21 |
aattcaaagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacaga |
120 |
Q |
| |
|
|||| ||||| ||| |||| ||||| ||||| |||||||| |||||||||||||||||||| |||||| | || || |||||||| |||| |||| |||| |
|
|
| T |
15910716 |
aatttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattcttaataatgcaga |
15910617 |
T |
|
| Q |
121 |
gggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttat |
220 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| ||||| |||||||| ||| | ||||| ||||| ||||| |||||||| | ||||| ||| || |
|
|
| T |
15910616 |
gggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcggcttttgctcagatggttttcat |
15910517 |
T |
|
| Q |
221 |
cgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccg-acagcaaggatgttttccttggttgggacttattgcaa |
319 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||| ||||| ||||| || ||||||| ||| ||| |||| ||||||||| ||||| ||||||| |
|
|
| T |
15910516 |
cgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatc-tcacccgaacaacaaagatgatttccttggatgggataaattgcaa |
15910418 |
T |
|
| Q |
320 |
caaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
15910417 |
caaattgctctaggcatagctaatggcattgagtat |
15910382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 1390 - 1724
Alignment:
| Q |
21 |
aattcaaagaaaagctaggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacaga |
120 |
Q |
| |
|
|||| ||||| ||| |||| ||||| ||||| |||||||| |||||||||||||||||||| |||||| | || || |||||||| |||| |||| |||| |
|
|
| T |
1390 |
aatttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattcttaataatgcaga |
1489 |
T |
|
| Q |
121 |
gggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttat |
220 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| ||||| |||||||| ||| | ||||| ||||| |||||||||||||| || ||||| ||| | |
|
|
| T |
1490 |
gggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttttgcgcagatggttttcgt |
1589 |
T |
|
| Q |
221 |
cgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccg-acagcaaggatgttttccttggttgggacttattgcaa |
319 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||| || || ||||| || ||||| | ||| ||| |||| ||||||||| ||||| ||||||| |
|
|
| T |
1590 |
cgtgctttagtttatgacttttttccaaatggttcgttacagaaattcatatc-tcacctgaacaacaaagatgatttccttggatgggataaattgcaa |
1688 |
T |
|
| Q |
320 |
caaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
1689 |
caaattgctctaggcatagctaatggcattgagtat |
1724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 9171296 - 9171533
Alignment:
| Q |
36 |
taggtgaaggagctcacggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgcttagtaatacagagggagatgggagtga |
135 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||||||||||||| | |||||| | |||| ||| |||||||| | ||| |||||||||||||||| || |
|
|
| T |
9171296 |
taggcgaaggagctcatggagctgtttacaaaggtaaattatcaagccaaattctagttggtgttaagatgctaaataacacagagggagatgggaagga |
9171395 |
T |
|
| Q |
136 |
gttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttat |
235 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||| | |||||||| || |||||||||||||| |||||||||||| |||||||| | || ||| |
|
|
| T |
9171396 |
gttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgatggatttcatcgtgctctagtctat |
9171495 |
T |
|
| Q |
236 |
gactttttcccgaatggttcgttgcaaaacttcatttc |
273 |
Q |
| |
|
|| |||||||| |||||||| ||||| || |||||||| |
|
|
| T |
9171496 |
gattttttcccaaatggttctttgcagaaattcatttc |
9171533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 9171580 - 9171621
Alignment:
| Q |
314 |
ttgcaacaaattgctctaggcattgccaatgggattgagtat |
355 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
9171580 |
ttgcaacaaattgctctaggaatagccaatggaattgagtat |
9171621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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