View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_36 (Length: 367)
Name: NF16931_low_36
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 27 - 363
Target Start/End: Original strand, 11038079 - 11038415
Alignment:
| Q |
27 |
tcaatgatattgaactaaattttataataaaaatgattgcatgtcacaagacggagcatatagttgcatgtgacaattgagggaagttattattgttatc |
126 |
Q |
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| T |
11038079 |
tcaatgatattgaactaaattttataataaaaatgattgcatgtgacaagacggagcatatagttgcatgtgacaattgagggaagttattattgttatc |
11038178 |
T |
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| Q |
127 |
atgtaaagccatgtgatgcagtcatgtgatgctggatctttctatgtcaatgtcagatcttcttgtatcagtaggatcctgactttgccaactactcttt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11038179 |
atgtaaagccatgtgatgcagtcatgtgatgctggatctttctatgtcaatgtcagatcttcttgtatcagtaggatcctgactttgccaactactcttt |
11038278 |
T |
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| Q |
227 |
gtccttccatttaaaacaataataactaaccacgcatccaatctagcaaagtacaggtacctgtcctccaatggtcaacatgaatcacaaaacatgtcaa |
326 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11038279 |
gtcctttcatttaaaacaacaataactaaccacgcatccaatctagcaaagtacaggtacctgtccaccaatggtcaacatgaatcacaaaacatgtcaa |
11038378 |
T |
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| Q |
327 |
tacaattgtagaaaaagagtgattgcatcttcttttc |
363 |
Q |
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|||||||||||||||||||||||||||| ||| |||| |
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| T |
11038379 |
tacaattgtagaaaaagagtgattgcattttcatttc |
11038415 |
T |
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