View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_39 (Length: 338)

Name: NF16931_low_39
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_39
NF16931_low_39
[»] chr4 (22 HSPs)
chr4 (197-328)||(46817473-46817605)
chr4 (18-170)||(33164391-33164556)
chr4 (18-100)||(46817350-46817432)
chr4 (18-95)||(36217985-36218062)
chr4 (70-168)||(36172194-36172292)
chr4 (102-174)||(28798128-28798200)
chr4 (119-174)||(46817432-46817487)
chr4 (23-95)||(12572691-12572763)
chr4 (102-173)||(42099509-42099580)
chr4 (18-113)||(55312204-55312299)
chr4 (102-159)||(53267784-53267841)
chr4 (102-174)||(12572802-12572874)
chr4 (106-174)||(24972413-24972481)
chr4 (106-174)||(40450954-40451022)
chr4 (123-173)||(28796644-28796694)
chr4 (106-168)||(36217899-36217961)
chr4 (103-169)||(51718202-51718268)
chr4 (124-173)||(55523749-55523798)
chr4 (60-92)||(28798073-28798105)
chr4 (106-170)||(34235691-34235755)
chr4 (106-174)||(36498929-36498997)
chr4 (119-171)||(53265818-53265870)
[»] chr5 (16 HSPs)
chr5 (18-173)||(40008736-40008904)
chr5 (18-95)||(3458097-3458174)
chr5 (106-174)||(4845324-4845392)
chr5 (102-159)||(1975285-1975342)
chr5 (106-173)||(5504760-5504827)
chr5 (106-171)||(6702396-6702461)
chr5 (106-171)||(30491782-30491847)
chr5 (106-173)||(33144171-33144238)
chr5 (102-168)||(19399519-19399585)
chr5 (102-159)||(3458052-3458109)
chr5 (18-117)||(19399616-19399715)
chr5 (104-171)||(38739413-38739480)
chr5 (120-174)||(30489746-30489800)
chr5 (119-168)||(19401999-19402048)
chr5 (121-174)||(40017354-40017407)
chr5 (119-159)||(6706035-6706075)
[»] chr8 (5 HSPs)
chr8 (18-139)||(43640872-43640993)
chr8 (18-115)||(28706993-28707090)
chr8 (18-174)||(33800384-33800553)
chr8 (106-170)||(9384643-9384707)
chr8 (125-169)||(35841425-35841469)
[»] chr2 (13 HSPs)
chr2 (64-169)||(18387269-18387374)
chr2 (18-117)||(42119288-42119387)
chr2 (19-159)||(12969151-12969304)
chr2 (18-117)||(30760285-30760384)
chr2 (102-159)||(42119195-42119252)
chr2 (102-173)||(30760178-30760249)
chr2 (18-92)||(22492564-22492638)
chr2 (119-174)||(22496076-22496131)
chr2 (106-173)||(11573657-11573724)
chr2 (102-159)||(22492484-22492541)
chr2 (118-171)||(8273271-8273324)
chr2 (106-171)||(31133205-31133270)
chr2 (119-171)||(11712984-11713036)
[»] chr3 (21 HSPs)
chr3 (18-174)||(53827547-53827716)
chr3 (18-115)||(44836345-44836442)
chr3 (78-172)||(42381640-42381734)
chr3 (83-174)||(42994859-42994950)
chr3 (104-170)||(6162667-6162733)
chr3 (82-174)||(16931469-16931561)
chr3 (18-92)||(47064982-47065056)
chr3 (106-174)||(19866756-19866824)
chr3 (106-174)||(34086827-34086895)
chr3 (102-170)||(44836461-44836529)
chr3 (106-173)||(15041993-15042060)
chr3 (119-174)||(35485266-35485321)
chr3 (118-171)||(19872140-19872193)
chr3 (119-159)||(2325561-2325601)
chr3 (106-174)||(7666949-7667017)
chr3 (120-171)||(15040707-15040758)
chr3 (121-174)||(16967985-16968038)
chr3 (119-168)||(42947404-42947453)
chr3 (106-174)||(3860826-3860893)
chr3 (103-159)||(35995175-35995231)
chr3 (102-170)||(42950971-42951039)
[»] chr7 (13 HSPs)
chr7 (19-159)||(48221601-48221738)
chr7 (28-114)||(20379526-20379612)
chr7 (18-92)||(26604059-26604133)
chr7 (102-168)||(38792031-38792097)
chr7 (106-170)||(26604160-26604224)
chr7 (106-173)||(44552689-44552756)
chr7 (18-92)||(30359822-30359896)
chr7 (88-173)||(31823613-31823698)
chr7 (121-174)||(48211803-48211856)
chr7 (102-170)||(20379651-20379719)
chr7 (119-174)||(1537246-1537301)
chr7 (31-98)||(2355584-2355650)
chr7 (119-171)||(5172-5224)
[»] chr6 (6 HSPs)
chr6 (18-95)||(35060813-35060890)
chr6 (102-172)||(14154560-14154630)
chr6 (104-159)||(35060880-35060935)
chr6 (119-174)||(14830415-14830470)
chr6 (124-169)||(14430972-14431017)
chr6 (113-170)||(17436063-17436120)
[»] chr1 (14 HSPs)
chr1 (18-117)||(47488873-47488974)
chr1 (18-172)||(50069120-50069287)
chr1 (119-171)||(39650222-39650274)
chr1 (102-174)||(47489010-47489082)
chr1 (18-92)||(45688445-45688519)
chr1 (19-92)||(11821280-11821349)
chr1 (119-171)||(28446530-28446582)
chr1 (106-174)||(33403113-33403181)
chr1 (119-170)||(35563532-35563583)
chr1 (106-173)||(35577511-35577578)
chr1 (106-170)||(28442949-28443013)
chr1 (119-171)||(33617670-33617722)
chr1 (119-171)||(35563386-35563438)
chr1 (106-174)||(48025579-48025647)
[»] scaffold0041 (1 HSPs)
scaffold0041 (106-174)||(24352-24420)
[»] scaffold1063 (1 HSPs)
scaffold1063 (104-170)||(1502-1568)
[»] scaffold1763 (1 HSPs)
scaffold1763 (28-95)||(243-310)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 46817473 - 46817605
Alignment:
Q  197 aagaaagagcgatactgtttagataatgaatataattcatatgaatattcataaacagggctgtggactgtggttgtgggtaggtagttgtttcaagata 296  Q
    ||||| ||||||||||||| || ||||||  | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46817473 aagaatgagcgatactgttcaggtaatgagcagaattcatatgaatattcataaatagggctgtggactgtggttgtgggtaggtagttgtttcaagata 46817572  T
Q  297 g-ttactctttagatgcctcaaattcgtctctg 328  Q
    | |||||||||||||||||||||||||| ||||    
T  46817573 gtttactctttagatgcctcaaattcgtttctg 46817605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 33164391 - 33164556
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac------------ac-agcacaa 104  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||| ||||||||||| ||            || |||||||    
T  33164391 gtgtgtgttgtgtttgaaaatgatgcagaatgaggttctgcctgggctaataacagcatgtagtgtgacttaagttacgtttctcttataactagcacaa 33164490  T
Q  105 cttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  33164491 cttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcg 33164556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 46817350 - 46817432
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||||||| ||||    
T  46817350 gtgtgtgttgtgtttgaaaatgatgcagaatgaggttttgcctggactaataacagcatgtagcgtgacttaagtcacgcagc 46817432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 36218062 - 36217985
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac 95  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||||| ||||||| ||||||||||||||||||    
T  36218062 gtgtgtgttgtgtttgaaaatgaggcagaatgaggttctgtctgggctaatcacagcacgtagcgtgacttaagtcac 36217985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 36172292 - 36172194
Alignment:
Q  70 acagcacatagcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 168  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||| | |||||||||||||| | |||||  ||||| ||| ||||||||  |||||||    
T  36172292 acagcacgtagcgtgacttaagtcacgtagcacaacttaagtcacaccacgcatgttaacatacataggggtattttggacttttactttgggaatgag 36172194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 28798128 - 28798200
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    ||||||||||||| |||| |||||||||||| | |||| |||||| |||||||||||| ||||||||||||||    
T  28798128 caacttaagtcacactacacatgttaacatgtgcaggggcattttggacatttactttgagaatgagcgatac 28798200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 46817432 - 46817487
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  46817432 cgcatgttaacatgcgtaggggcattttgaacatttactttaagaatgagcgatac 46817487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 12572691 - 12572763
Alignment:
Q  23 tgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac 95  Q
    ||||||||||||||||||||||  || ||||| ||||||||||||||| ||||  |||| |||||||||||||    
T  12572691 tgttgtgtttgaaaatgatgcatgatgaggttctgcctgggctaataatagcatgtagcatgacttaagtcac 12572763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 42099509 - 42099580
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    ||||||||||||||||||||||||||||||||| |||   ||||| ||||||||||||   |||||||||||    
T  42099509 caacttaagtcacgctacgcatgttaacatgcgcaggtgtattttggacatttactttggaaatgagcgata 42099580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 55312299 - 55312204
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtca 113  Q
    ||||||||||||||||||||| || ||  || ||||| || || ||||||||||||||| ||| |||||| |||||||  ||| ||||||||||||    
T  55312299 gtgtgtgttgtgtttgaaaataatacatgatgaggttctgtctcggctaataacagcacgtagtgtgactcaagtcacgtagcgcaacttaagtca 55312204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 53267784 - 53267841
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |  |||||||||||    
T  53267784 caacttaagtcacgctacgtatgttaacatgcgtagggacaatatgaacatttacttt 53267841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 12572802 - 12572874
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| ||||||||| || |||| |||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  12572802 caacataagtcacgatatgcatattaacatgcgcaggggcattttggacatttactttgagaatgaacgatac 12572874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 24972481 - 24972413
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||||||| ||||||||||||||||   |||| ||| ||||||||| |||||||||||||    
T  24972481 ttaactcacgctacgcaagttaacatgcgtaggggtgtttttgacttttactttaggaatgagcgatac 24972413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 40451022 - 40450954
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| ||| ||||| || |||||||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  40451022 ttaactcaagctacacaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatac 40450954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 28796694 - 28796644
Alignment:
Q  123 tgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||||||||||  | ||||||||| |||||||||||| |||||||||||||    
T  28796694 tgttaacatgcacatggacattttggacatttactttgagaatgagcgata 28796644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 36217961 - 36217899
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 168  Q
    |||| |||||||||| | |||||||||||||||| |||||| ||| ||||||||  |||||||    
T  36217961 ttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttactttgggaatgag 36217899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 51718268 - 51718202
Alignment:
Q  103 aacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagc 169  Q
    ||||||||||||||||| ||||||||  || |||||| |||||| ||| ||||||||  ||||||||    
T  51718268 aacttaagtcacgctacacatgttaagttgtgtaggggcattttcgacttttactttgggaatgagc 51718202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 55523798 - 55523749
Alignment:
Q  124 gttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||||||||||||||| |||||| ||| |||||||| | |||||||||||    
T  55523798 gttaacatgcgtaggggcattttcgacttttactttgaaaatgagcgata 55523749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 28798073 - 28798105
Alignment:
Q  60 tgggctaataacagcacatagcgtgacttaagt 92  Q
    ||||||||||||||||| |||||||||||||||    
T  28798073 tgggctaataacagcacgtagcgtgacttaagt 28798105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 34235691 - 34235755
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    ||||||||| | | ||||||||||||||||| || |||||  | ||||||||||| |||||||||    
T  34235691 ttaagtcacacaatgcatgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcg 34235755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 36498997 - 36498929
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||| ||| |||||||||| ||||| ||||||  || ||||||||  |||||||||||||    
T  36498997 ttaactcacgctatgcaagttaacatgcataggggcattttcaacttttactttgggaatgagcgatac 36498929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 53265870 - 53265818
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||||||||||||  |||||| ||  ||||||||| ||||||||||    
T  53265870 cgcatgttaacatgcgtaggagcattttggaattttactttaggaatgagcga 53265818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 40008904 - 40008736
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac-------------acagcacaa 104  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| ||              |||| |||    
T  40008904 gtgtgtgttgtgtttgaaaatgatgcagaatgaggttttgcctgggctaataacagcaagtagcgtgacttaagttacgttccttttataaccagcgcaa 40008805  T
Q  105 cttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  40008804 cttaagtcacgctacgcatgttaacatgcgcaggggcattttagacatttactttgagaatgagcgata 40008736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 3458174 - 3458097
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac 95  Q
    ||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||| ||||||||  |||||||||||    
T  3458174 gtgtgtgttgtgtttgaaagtgatgcataatgaggttctgcctgggctaataacaggacatagcgcaacttaagtcac 3458097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 4845392 - 4845324
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||| |||||||||||||| |||  |||||||||||||||||||| |||||||||||||    
T  4845392 ttaagtcacgctacacatgttaacatgcgcaggagcattttagacatttactttaggaatgagcgatac 4845324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 1975285 - 1975342
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    ||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||    
T  1975285 caacttaagtcacgctacgcatgttaacatgcgcatgggcattttggacatttacttt 1975342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 5504827 - 5504760
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||| |||||||||||| |||||||||||||| | |||||| ||| ||||||||| ||||||||||||    
T  5504827 ttaactcacgctacgcaagttaacatgcgtagaggcattttcgacttttactttaggaatgagcgata 5504760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 6702461 - 6702396
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    |||| |||||||||||| ||||||||||||| || |||||| ||| |||||||| |||||||||||    
T  6702461 ttaactcacgctacgcaagttaacatgcgtatgggcatttttgacttttactttgagaatgagcga 6702396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 30491782 - 30491847
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    |||| |||| ||||||| ||||||||||||||||||||||| ||| ||||||||  ||||||||||    
T  30491782 ttaactcacactacgcaagttaacatgcgtagggacattttcgacttttactttgggaatgagcga 30491847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 33144171 - 33144238
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||| |||| ||||||| |||||||||||||||| |||||  | ||||||||||| ||||||||||||    
T  33144171 ttaactcaccctacgcaagttaacatgcgtaggggcatttcggtcatttactttaggaatgagcgata 33144238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 19399585 - 19399519
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 168  Q
    |||||||||||||||||| |||||||||||| ||| | |||||||  || ||||||||| |||||||    
T  19399585 caacttaagtcacgctacacatgttaacatgtgtatgtacattttgaacttttactttaggaatgag 19399519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 3458109 - 3458052
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    ||||||||||||||||||||||||||||||| | | ||  ||||| ||||||||||||    
T  3458109 caacttaagtcacgctacgcatgttaacatgtgcatgggtattttggacatttacttt 3458052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 19399715 - 19399616
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacgct 117  Q
    ||||||||  ||||||||||||| ||||||| | ||| |  || ||||||| ||| ||| |||||| |||||||||||  |||  |||||||||||||||    
T  19399715 gtgtgtgtgttgtttgaaaatgaggcagaatcaagttctctctaggctaattacatcacgtagcgtaacttaagtcacgtagcggaacttaagtcacgct 19399616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 38739480 - 38739413
Alignment:
Q  104 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||||  ||||||| |||| ||||||||| |||||  |||||||||||| | |||||||||    
T  38739480 acttaagtcacgtaacgcatgctaacttgcgtaggggcatttgtgacatttactttgacaatgagcga 38739413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 30489800 - 30489746
Alignment:
Q  120 gcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||||||||| |||||| ||| ||||||||  |||||| ||||||    
T  30489800 gcatgttaacatgcgtaggggcattttcgacttttactttgggaatgaacgatac 30489746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 19401999 - 19402048
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 168  Q
    |||||||||||||||||| || |||||| ||| |||||||| ||||||||    
T  19401999 cgcatgttaacatgcgtatgggcattttggacttttactttgagaatgag 19402048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 40017354 - 40017407
Alignment:
Q  121 catgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    ||||||||| |||||| |||||||||||||||||| |||  ||||||| |||||    
T  40017354 catgttaacctgcgtaaggacattttagacatttattttgggaatgagtgatac 40017407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 6706035 - 6706075
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    ||||||||||||||||||||| ||||| || ||||||||||    
T  6706035 cgcatgttaacatgcgtaggggcatttcagtcatttacttt 6706075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 43640872 - 43640993
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacgct 117  Q
    ||||||||||||||||||||||| |||||||  |||| ||||||||||||| | |||| |||||||||||||||||||  ||| ||||||||||||||||    
T  43640872 gtgtgtgttgtgtttgaaaatgaggcagaatgtggttctgcctgggctaattatagcatatagcgtgacttaagtcacgtagcgcaacttaagtcacgct 43640971  T
Q  118 acgcatgttaacatgcgtaggg 139  Q
    || || ||||||||||||||||    
T  43640972 acacaagttaacatgcgtaggg 43640993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 28706993 - 28707090
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacg 115  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||| | |||||||||||| ||||||||||||||||||  ||| ||||||||||||||    
T  28706993 gtgtgtgttgtgtttgaaaatgatgcataatgaggttctgcctgagttaataacagcacgtagcgtgacttaagtcacgtagcgcaacttaagtcacg 28707090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 33800384 - 33800553
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac------------ac-agcacaa 104  Q
    ||||||||||||||||||||||||||||||| ||||| || |||  ||||||||||||| |||| ||||||||||  |            || ||  |||    
T  33800384 gtgtgtgttgtgtttgaaaatgatgcagaatgaggttatgtctgacctaataacagcacgtagcatgacttaagttgcgttcctcttataactagtgcaa 33800483  T
Q  105 cttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||    
T  33800484 cttaagtcacgctacgcatgttaacatgcgcaagggcattttagacatttactttaggaatgagcgatac 33800553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 9384707 - 9384643
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||| ||||||||||||||||||  |||||||||||||||| |||||||| ||| | ||||||||    
T  9384707 ttaactcacgctacgcatgttaagttgcgtagggacattttggacatttattttgaaaatgagcg 9384643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 35841469 - 35841425
Alignment:
Q  125 ttaacatgcgtagggacattttagacatttactttaagaatgagc 169  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  35841469 ttaacatgcgtagggatattttggacatttactttaaaaatgagc 35841425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 18387374 - 18387269
Alignment:
Q  64 ctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaaga 163  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||| || |||||||||  ||    
T  18387374 ctaataacagcacgtagcgtgacttaagtcacatagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcatttttgatatttactttggga 18387275  T
Q  164 atgagc 169  Q
    ||||||    
T  18387274 atgagc 18387269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 42119387 - 42119288
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacgct 117  Q
    |||||||||||||||||||||||||||  || ||||| ||||||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||||||||    
T  42119387 gtgtgtgttgtgtttgaaaatgatgcatgatgaggttctgcctgggctaataacaacacgtagcgtgacttaagtcacgtagcgcaacttaagtcacgct 42119288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 12969151 - 12969304
Alignment:
Q  19 tgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac------------ac-agcacaac 105  Q
    |||||||  ||||||||||||| ||||||| ||| | ||||||||||||| ||||||| ||||||||||||||| ||            || ||| ||||    
T  12969151 tgtgtgtgttgtttgaaaatgaggcagaatgaggctctgcctgggctaattacagcacgtagcgtgacttaagttacgtttatcttataactagcgcaac 12969250  T
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    |||||||||||||||||||||||||||||||||| ||||||  || ||||||||    
T  12969251 ttaagtcacgctacgcatgttaacatgcgtaggggcattttgaacttttacttt 12969304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 30760384 - 30760285
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacgct 117  Q
    ||||||||||||||| ||||||||| | ||| || || || |||||||||||||| ||| |||| ||| |||||||||  ||||||||||||||||||||    
T  30760384 gtgtgtgttgtgtttaaaaatgatgtataatgagattctgtctgggctaataacaacacgtagcatgagttaagtcacgtagcacaacttaagtcacgct 30760285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 42119252 - 42119195
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  42119252 caacttaagtcacgctacacatgttaacatgcgtaggggcattttggacatttacttt 42119195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 30760249 - 30760178
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||  |||||| ||||    
T  30760249 caacttaagttacgctacacatattaacatgcgcagggacattttagacatttactttagaaatgagtgata 30760178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 22492638 - 22492564
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt 92  Q
    ||||||||||||||||||||||||||   || ||||| || |||||||||||||||||| || ||||||||||||    
T  22492638 gtgtgtgttgtgtttgaaaatgatgcttgatgaggttctgtctgggctaataacagcacgtaacgtgacttaagt 22492564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 22496076 - 22496131
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||||||| || ||||||||||||||||||| | ||||||||||||    
T  22496076 cgcatgttaacatgcgtaagggcattttagacatttactttgaaaatgagcgatac 22496131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 11573724 - 11573657
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||| |||||||||||| |||||||| ||||||| |||||| ||| ||||||||  ||||||||||||    
T  11573724 ttaactcacgctacgcaagttaacatacgtaggggcatttttgacttttactttgggaatgagcgata 11573657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 22492541 - 22492484
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    |||||||||||||||||| |||||||| ||||| |||| ||||||  |||||||||||    
T  22492541 caacttaagtcacgctacacatgttaatatgcgcaggggcattttgaacatttacttt 22492484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 8273324 - 8273271
Alignment:
Q  118 acgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    |||||||||||||||||||||| |||||  | ||||||||||  ||||||||||    
T  8273324 acgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcga 8273271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 31133270 - 31133205
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||   ||||||||||| || |||||| |||||  |||||||||||||| |||||||||    
T  31133270 ttaagtcacgtagcgcatgttaacttgtgtaggggcatttatgacatttactttaaaaatgagcga 31133205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 11713036 - 11712984
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||||| ||||||| |||||| ||| ||||||||  ||||||||||    
T  11713036 cgcatgttaacatacgtaggggcattttggacttttactttgggaatgagcga 11712984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 53827547 - 53827716
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt-------cac-----ac-agcacaa 104  Q
    |||||||||||||||||||||||||||  || ||||| ||||||| ||||||||||||| |||||||||||||||       | |     || ||| |||    
T  53827547 gtgtgtgttgtgtttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttgtgttcctcttataactagcgcaa 53827646  T
Q  105 cttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||  |||||||||||||    
T  53827647 cttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatac 53827716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 44836345 - 44836442
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacg 115  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||| ||||| |||||||  ||||||||||||||||| |||| ||||||||||||||    
T  44836345 gtgtgtgttgtgtttgaaaatgaggcagaatgaggttctgcctggactaattacagcacgcagcgtgacttaagtcacgcagcgcaacttaagtcacg 44836442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 42381734 - 42381640
Alignment:
Q  78 tagcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgat 172  Q
    |||| |||||||| ||||  ||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||   ||||||||||    
T  42381734 tagcatgacttaaatcacgtagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcattttggacatttactttggaaatgagcgat 42381640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 42994859 - 42994950
Alignment:
Q  83 tgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||  | | ||||||||||||||||| ||||||||||||||  | || |||||||||||||||||||  |||||||||||||    
T  42994859 tgacttaagtcacgtatcgcaacttaagtcacgctatgcatgttaacatgcccatgggcattttagacatttactttgggaatgagcgatac 42994950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 6162667 - 6162733
Alignment:
Q  104 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||  |||||||||    
T  6162667 acttaagtcacgctacgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcg 6162733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 16931561 - 16931469
Alignment:
Q  82 gtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    ||||||||||||||  ||| |||||||| ||||| |||||||||||||||||| || || || || ||||||||||||| ||| |||||||||    
T  16931561 gtgacttaagtcacgtagcgcaacttaaatcacggtacgcatgttaacatgcgcagagatatattggacatttactttaggaacgagcgatac 16931469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 47065056 - 47064982
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt 92  Q
    ||||||||  ||||||||||||| ||||||| ||||| ||||||||||||| ||| ||| |||||||||||||||    
T  47065056 gtgtgtgtgttgtttgaaaatgaggcagaatgaggttctgcctgggctaattacaacacgtagcgtgacttaagt 47064982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 19866824 - 19866756
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||||||| |||||||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  19866824 ttaactcacgctacgcaagttaacatgcgtaggggcatttttgacttttactttgggaatgagcgatac 19866756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 34086827 - 34086895
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||||||| |||||||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  34086827 ttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatac 34086895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 44836461 - 44836529
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||||||||||||||||| ||||||||||||||||||| || | | |||||||||||||  ||||||||    
T  44836461 caacttaagtcacgctacacatgttaacatgcgtaggggcaatatggacatttactttagaaatgagcg 44836529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 15041993 - 15042060
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||| |||||||||||| |||||||||||||||| |||||| ||| ||||||||  ||||||||||||    
T  15041993 ttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgata 15042060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 35485321 - 35485266
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||    
T  35485321 cgcatgttaacatgtgcaggggcattttaaacatttactttaagaatgagcgatac 35485266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 19872140 - 19872193
Alignment:
Q  118 acgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    |||||||||||||||||||| | |||||||| |||||| |||| ||||||||||    
T  19872140 acgcatgttaacatgcgtagaggcattttagtcatttattttaggaatgagcga 19872193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 2325561 - 2325601
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  2325561 cgcatgttaacatgcgtagggacattttaaacttttacttt 2325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 7666949 - 7667017
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||| ||| |||||||||||||||| |||||| ||| |||| |||  |||||||||||||    
T  7666949 ttaactcacgctatgcaagttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatac 7667017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 15040758 - 15040707
Alignment:
Q  120 gcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    |||||||||||||||||||| ||||| || ||||||||||  ||||||||||    
T  15040758 gcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcga 15040707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 16967985 - 16968038
Alignment:
Q  121 catgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    ||||||||||| |||||||  |||||||||||||| |||| ||||||| |||||    
T  16967985 catgttaacatacgtaggggtattttagacatttattttaggaatgagtgatac 16968038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 42947453 - 42947404
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 168  Q
    ||||||||||||||||||||  |||||| ||| |||||||| ||||||||    
T  42947453 cgcatgttaacatgcgtaggagcattttggacttttactttgagaatgag 42947404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 3860826 - 3860893
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||||||| |||||||| ||||||| | ||||  || |||||||| ||||||||||||||    
T  3860826 ttaactcacgctacgcaagttaacatacgtaggg-cgttttcaacttttactttgagaatgagcgatac 3860893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 35995231 - 35995175
Alignment:
Q  103 aacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    ||||||| |||||  ||||||||||||||||| |||| ||||||| || ||||||||    
T  35995231 aacttaactcacgtgacgcatgttaacatgcgaaggggcattttaaacttttacttt 35995175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 42950971 - 42951039
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||||||| ||||||||| ||||||||||| |||| || || | | ||||||||||||  |||||||||    
T  42950971 caacttaaatcacgctacacatgttaacatacgtatgggcaatatggacatttactttgggaatgagcg 42951039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 48221601 - 48221738
Alignment:
Q  19 tgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacgcta 118  Q
    |||||||  ||||||||||||| ||||||   |||| || ||||| |||| ||||||| ||||||||||||||||||  ||| |||||||||||||||||    
T  48221601 tgtgtgtgttgtttgaaaatgaggcagaa---ggttctggctgggttaattacagcacgtagcgtgacttaagtcacgtagcgcaacttaagtcacgcta 48221697  T
Q  119 cgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    | ||||||| |||||||||||  ||||| ||||||||||||    
T  48221698 cacatgttagcatgcgtaggggtattttggacatttacttt 48221738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 20379526 - 20379612
Alignment:
Q  28 tgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcac 114  Q
    ||||||||||||| ||||||| ||||| ||  | ||||||| ||||||| ||||||||||||||||||   || |||||||||||||    
T  20379526 tgtttgaaaatgaggcagaatgaggttctgtttaggctaattacagcacgtagcgtgacttaagtcacgtggcgcaacttaagtcac 20379612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 26604059 - 26604133
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt 92  Q
    ||||||||  ||||||||||||| ||||||  ||||| || |||||||||| ||||||| |||||||||||||||    
T  26604059 gtgtgtgtgttgtttgaaaatgaggcagaacgaggttatgtctgggctaattacagcacgtagcgtgacttaagt 26604133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 38792031 - 38792097
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 168  Q
    |||||||||||||||||||||||||| || | ||||||  ||||||||| |||||||| ||||||||    
T  38792031 caacttaagtcacgctacgcatgttatcaagtgtaggggtattttagacttttactttgagaatgag 38792097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 26604160 - 26604224
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||| |||||||||| | |||||||||||||||| ||||||| || |||||||| ||||||||||    
T  26604160 ttaactcacgctacgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcg 26604224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 44552689 - 44552756
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||| ||||| |||||| |||||||||||||||  |||||| ||| |||||||| |||||||||||||    
T  44552689 ttaactcacgttacgcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgata 44552756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 30359896 - 30359822
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt 92  Q
    ||||||||  ||||||||||||| ||||||| ||||| ||| || |||||| ||||||  |||||||||||||||    
T  30359896 gtgtgtgtgttgtttgaaaatgaggcagaatgaggttctgcttgagctaattacagcatgtagcgtgacttaagt 30359822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 31823698 - 31823613
Alignment:
Q  88 taagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    ||||||||  ||| |||||||||| |||| ||||||||||||||| | |||| |||||| || ||||| |||  ||||||||||||    
T  31823698 taagtcacgtagcgcaacttaagttacgcaacgcatgttaacatgtgcaggggcattttggatatttattttgggaatgagcgata 31823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 48211856 - 48211803
Alignment:
Q  121 catgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||| | |||||||||| | |||||||||| |||||||||||||    
T  48211856 catgttaacatgcgcatggacattttaaaaatttactttaggaatgagcgatac 48211803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 20379651 - 20379719
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    ||||||||||||||||| |||| ||||  ||||||||| |||||| ||| ||||||||  |||||||||    
T  20379651 caacttaagtcacgctatgcatattaagttgcgtaggggcattttggacttttactttgggaatgagcg 20379719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 1537246 - 1537301
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||||| |||| ||||||  ||||||||||| ||||||| ||||||    
T  1537246 cgcatgttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatac 1537301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 2355650 - 2355584
Alignment:
Q  31 ttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacaca 98  Q
    ||||| |||| ||||||| ||||| ||||||| |||| | |||||| |||||||||||||||||||||    
T  2355650 ttgaagatgaggcagaatgaggttctgcctgg-ctaagagcagcacgtagcgtgacttaagtcacaca 2355584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 5172 - 5224
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||||||||||||| |||||  | ||||||||||  ||||||||||    
T  5172 cgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcga 5224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 35060813 - 35060890
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac 95  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||  ||||||||||||||||||    
T  35060813 gtgtgtgttgtgtttgaaaatgatgcagaatgaggttctgcttgggctaataacagcatgtagcgtgacttaagtcac 35060890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 14154560 - 14154630
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgat 172  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  14154560 caacttaagtcacgctacacatgttaacatgcgcagggacattttggacatttattttaggaatgagcgat 14154630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 35060880 - 35060935
Alignment:
Q  104 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 159  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  35060880 acttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttacttt 35060935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 14830470 - 14830415
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||    
T  14830470 cgcatgttaacatgtgtagggacattttggacatttactttgggaatgagcgatac 14830415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 14431017 - 14430972
Alignment:
Q  124 gttaacatgcgtagggacattttagacatttactttaagaatgagc 169  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||    
T  14431017 gttaacatgcgtagggacattttaaacatttactttagaaatgagc 14430972  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 17436120 - 17436063
Alignment:
Q  113 acgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||||||||| |||||||||||||| | |||||||||| ||||||||  |||||||||    
T  17436120 acgctacgcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcg 17436063  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 47488873 - 47488974
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggc--taataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacg 115  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||||  |||||||||||| ||||||||||||||||||  ||  ||||||||| ||||    
T  47488873 gtgtgtgttgtgtttgaaaatgatgcagaatgaggttctgactgggctataataacagcacgtagcgtgacttaagtcacgtagagcaacttaagccacg 47488972  T
Q  116 ct 117  Q
    ||    
T  47488973 ct 47488974  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 50069120 - 50069287
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac------------ac-agcacaa 104  Q
    |||||||||||||||||||||||||||  || ||||| ||||||||||||||||| |||||||||||||||||||  |            || ||  |||    
T  50069120 gtgtgtgttgtgtttgaaaatgatgcatgatgaggttctgcctgggctaataacaacacatagcgtgacttaagttgcgttccgcttataactagtgcaa 50069219  T
Q  105 cttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgat 172  Q
    ||||| |||||||||| ||||||||||||| |||| |||||| ||||||||||||  |||||||||||    
T  50069220 cttaactcacgctacgtatgttaacatgcgcaggggcattttggacatttactttgggaatgagcgat 50069287  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 39650274 - 39650222
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  39650274 cgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcga 39650222  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 47489010 - 47489082
Alignment:
Q  102 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||||||||||||| |||||||||||||||| | | |  ||||||||||||||| ||||| ||||||||||||    
T  47489010 caacttaagtcacgttacgcatgttaacatgtgcaagagcattttagacatttattttaaaaatgagcgatac 47489082  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 45688519 - 45688445
Alignment:
Q  18 gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt 92  Q
    ||||||||  ||||||||||||| ||||||| ||||| |   ||||||||| |||||||||||||||||||||||    
T  45688519 gtgtgtgtgttgtttgaaaatgaggcagaatgaggttctatttgggctaattacagcacatagcgtgacttaagt 45688445  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 11821349 - 11821280
Alignment:
Q  19 tgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt 92  Q
    |||||||  ||||||||||||||||||||| |||||    |||||||||| || |||| |||||||||||||||    
T  11821349 tgtgtgtgttgtttgaaaatgatgcagaatgaggtt----ctgggctaattactgcacgtagcgtgacttaagt 11821280  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 28446530 - 28446582
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||||||||||||| ||||| || ||||||||||  ||||||||||    
T  28446530 cgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcga 28446582  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 33403113 - 33403181
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| ||||| |||||| |||||||||||||||| |||||| ||| ||||||||   ||||||||||||    
T  33403113 ttaactcacgttacgcaagttaacatgcgtaggggcattttcgacttttactttggaaatgagcgatac 33403181  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 35563583 - 35563532
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    ||||||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  35563583 cgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 35577511 - 35577578
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 173  Q
    |||| |||||||||||| ||||||||  |||||| |||||| ||| ||||||||  ||||||||||||    
T  35577511 ttaactcacgctacgcaagttaacatatgtaggggcattttcgacttttactttgggaatgagcgata 35577578  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 28443013 - 28442949
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||| ||||||||| || |||||||||||||||| ||||||  || ||||||||  |||||||||    
T  28443013 ttaactcacgctacacaagttaacatgcgtaggggcattttcaacttttactttgggaatgagcg 28442949  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 33617722 - 33617670
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    ||||||||||||||| ||||| |||||  | |||||||||| |||||||||||    
T  33617722 cgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcga 33617670  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 35563438 - 35563386
Alignment:
Q  119 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 171  Q
    |||||||||||||||| |||| ||||| || ||||||||||  ||||||||||    
T  35563438 cgcatgttaacatgcgcaggggcatttcagtcatttactttgggaatgagcga 35563386  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 48025647 - 48025579
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||||||| ||||||||||||| || ||||||  || | ||||||  |||||||||||||    
T  48025647 ttaactcacgctacgcaagttaacatgcgtaagggcattttcaacttctactttgggaatgagcgatac 48025579  T

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Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 24352 - 24420
Alignment:
Q  106 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 174  Q
    |||| |||||||||||| |||||||||||||||| ||||||| || ||||||||  |||||||||||||    
T  24352 ttaactcacgctacgcaagttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatac 24420  T

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Target: scaffold1063 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 1568 - 1502
Alignment:
Q  104 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 170  Q
    |||||| |||||  ||||||||||||||||| |||| |||||| ||| |||||||||| ||||||||    
T  1568 acttaactcacgtaacgcatgttaacatgcgcaggggcattttggacttttactttaaaaatgagcg 1502  T

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Target: scaffold1763 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 243 - 310
Alignment:
Q  28 tgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac 95  Q
    ||||||||||||| |||| || ||||| | | |||||||| ||||||||  |||||||||||||||||    
T  243 tgtttgaaaatgaggcaggatgaggttcttcttgggctaagaacagcacggagcgtgacttaagtcac 310  T

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