View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16931_low_43 (Length: 304)
Name: NF16931_low_43
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_43 |
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| [»] scaffold0483 (1 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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| [»] scaffold0192 (1 HSPs) |
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| [»] scaffold1409 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 22619728 - 22619444
Alignment:
| Q |
18 |
gagaaaacataagtcgaggttatcgggtttcagtagtccttaagtagcactttgagttgagatagtttatcactttgagttgacaaagtttatctgagct |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22619728 |
gagaaaacataagtcgaggttatcgggtttcagcagtccttaagtagcactttgagttgagatagtttatcactttgagttgacaaagtttatctgagct |
22619629 |
T |
|
| Q |
118 |
taactctgttacaaggtaccatagacctcataaacctatctgatttaacataggttaccgccagcttctgttacatcggttatcgcgatctcgacgagaa |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22619628 |
taactctgttacaaggtaccatagacctcataaacctatctgatttaacataggttattgccagcttctgttacatcggttatcgcgatctcgacgagaa |
22619529 |
T |
|
| Q |
218 |
ttttctccctagacatggccaatggtgtatactcatgaagcgaccgttgggtcctttgccttcacgagctactttgccttccttc |
302 |
Q |
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|||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22619528 |
ttttctccctggacatggccaagggtgtatactcgtgaagggaccgttgggtcctttgccttcatgagctactttgccttccttc |
22619444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 22066800 - 22066648
Alignment:
| Q |
18 |
gagaaaacataagtcgaggttatcgggtttcagtagtccttaagtagcactttgagttgagatagtttatcactttgagttgacaaagtttatctgagct |
117 |
Q |
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||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
22066800 |
gagaaaacataggccgaggttatcaggtttcagtagtccttaagtagcactttgagttgacatagtttatcactttgagttgacatagtttatctgagct |
22066701 |
T |
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| Q |
118 |
taactctgttacaaggtaccatagacctcataaacctatctgatttaacatag |
170 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22066700 |
taactccgttacaaggtaccatagacctcataaacctatctgatctaacatag |
22066648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 19022852 - 19022772
Alignment:
| Q |
90 |
ctttgagttgacaaagtttatctgagcttaactctgttacaaggtaccatagacctcataaacctatctgatttaacatag |
170 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19022852 |
ctttgagttgacatagtttatctgagcttaactccattacaaggtaccatagacctcataaacctatctgatctaacatag |
19022772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 19022901 - 19022831
Alignment:
| Q |
18 |
gagaaaacataagtcgaggttatcgggtttcagtagtccttaagtagcactttgagttgagatagtttatc |
88 |
Q |
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||||||||||| | |||||||||| ||||||| || |||||||||||| ||||||||||| |||||||||| |
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| T |
19022901 |
gagaaaacataggccgaggttatcaggtttcaatactccttaagtagccctttgagttgacatagtttatc |
19022831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 23490912 - 23491038
Alignment:
| Q |
177 |
gccagcttctgttacatcggttatcgcgatctcgacgagaattttctccctagacatggccaatggtgtatactc-atgaagcgaccgttgggtcctttg |
275 |
Q |
| |
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|||||||||| ||| ||||| || ||||||||| ||||| ||||||||||| |||||||| || || || ||| | ||||| ||||||||||| |||| |
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| T |
23490912 |
gccagcttcttttagatcggctaccgcgatctcaacgaggattttctcccttgacatggctaagggagtgtacccggtgaagtaaccgttgggtcttttg |
23491011 |
T |
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| Q |
276 |
ccttcacgagctactttgccttccttc |
302 |
Q |
| |
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||||| |||| | |||||||||||| |
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| T |
23491012 |
ccttcccgagtagccttgccttccttc |
23491038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 29566892 - 29567016
Alignment:
| Q |
176 |
cgccagcttctgttacatcggttatcgcgatctcgacgagaattttctccctagacatggccaatggtgtatactca-tgaagcgaccgttgggtccttt |
274 |
Q |
| |
|
||||| ||||||||| ||||| || ||||||||| |||| || |||||||| ||||||||||| ||||| |||||| ||||| |||||||||||| ||| |
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| T |
29566892 |
cgccaacttctgttagatcggctactgcgatctcggcgaggatcttctccctggacatggccaagggtgtgtactcagtgaagtgaccgttgggtcgttt |
29566991 |
T |
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| Q |
275 |
gccttcacgagctactttgccttcc |
299 |
Q |
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|||||||||| | ||||||||||| |
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| T |
29566992 |
tccttcacgagttgctttgccttcc |
29567016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 23928245 - 23928367
Alignment:
| Q |
176 |
cgccagcttctgttacatcggttatcgcgatctcgacgagaattttctccctagacatggccaatggtgtatactca-tgaagcgaccgttgggtccttt |
274 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||||| |||| |||||| ||| ||||||||||| ||||||||||| ||||| ||| ||||||| ||| |
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| T |
23928245 |
cgccagcttttgttatatcggctactgcgatctcggcgaggattttc--cctggacatggccaagggtgtatactcggtgaagtgactgttgggtatttt |
23928342 |
T |
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| Q |
275 |
gccttcacgagctactttgccttcc |
299 |
Q |
| |
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||||||||||| ||| ||||||||| |
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| T |
23928343 |
gccttcacgagttaccttgccttcc |
23928367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 302
Target Start/End: Original strand, 7803 - 7889
Alignment:
| Q |
217 |
attttctccctagacatggccaatggtgtatactca-tgaagcgaccgttgggtcctttgccttcacgagctactttgccttccttc |
302 |
Q |
| |
|
||||||||||| ||||| ||||| ||| ||||||| |||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
7803 |
attttctcccttgacattgccaagggtatatactcggtgaagcgatcgttaggtcctttgccttcgcgagctactttgccttccttc |
7889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 15454253 - 15454377
Alignment:
| Q |
176 |
cgccagcttctgttacatcggttatcgcgatctcgacgagaattttctccctagacatggccaatggtgtatactca-tgaagcgaccgttgggtccttt |
274 |
Q |
| |
|
|||||||||| |||| ||||| || | ||||||||||| || || ||||| ||||||||||| | ||||||||| ||||||||||||| ||||||| |
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| T |
15454253 |
cgccagcttccgttagatcggctactgtgatctcgacgaagatattttccctggacatggccaaggttgtatactcggtgaagcgaccgttaagtccttt |
15454352 |
T |
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| Q |
275 |
gccttcacgagctactttgccttcc |
299 |
Q |
| |
|
||||| |||||||||||||||||| |
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| T |
15454353 |
gcctttgcgagctactttgccttcc |
15454377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 302
Target Start/End: Complemental strand, 12417 - 12306
Alignment:
| Q |
192 |
atcggttatcgcgatctcgacgagaattttctccctagacatggccaatggtgtatactc-atgaagcgaccgttgggtcctttgccttcacgagctact |
290 |
Q |
| |
|
||||| || ||||||||| |||| ||||||||||| |||||||| || || || ||||| |||||| |||||||||||| ||||||||| |||| | |
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|
| T |
12417 |
atcggctaccgcgatctcagcgaggattttctcccttgacatggctaagggagtgtactcgatgaagggaccgttgggtcttttgccttcccgagtagcc |
12318 |
T |
|
| Q |
291 |
ttgccttccttc |
302 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12317 |
ttgccttccttc |
12306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 18734462 - 18734585
Alignment:
| Q |
176 |
cgccagcttctgttacatcggttatcgcgatctcgacgagaattttctccctagacatggccaatggtgtatactca-tgaagcgaccgttgggtccttt |
274 |
Q |
| |
|
||||||||||||| | ||||| || |||||||||||||| || || ||||| |||||| |||| | ||| ||||| ||||| |||| ||||||| ||| |
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|
| T |
18734462 |
cgccagcttctgtcagatcggctactgcgatctcgacgaggatctt-tccctggacatgaccaaggatgtgtactctgtgaagtgaccattgggtcgttt |
18734560 |
T |
|
| Q |
275 |
gccttcacgagctactttgccttcc |
299 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
18734561 |
tccttcacgagtcactttgccttcc |
18734585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 8564 - 8662
Alignment:
| Q |
202 |
gcgatctcgacgagaattttctccctagacatggccaatggtgtatactca-tgaagcgaccgttgggtcctttgccttcacgagctactttgccttcc |
299 |
Q |
| |
|
||||||||| |||| ||||||||| | |||||||| || ||||| | ||| | ||||||||| | ||| ||||||||||| |||||||||| |||||| |
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|
| T |
8564 |
gcgatctcggcgaggattttctccttggacatggctaagggtgtgttctcggtaaagcgaccggtcggtactttgccttcatgagctacttttccttcc |
8662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1409 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1409
Description:
Target: scaffold1409; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 458 - 507
Alignment:
| Q |
253 |
tgaagcgaccgttgggtcctttgccttcacgagctactttgccttccttc |
302 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
458 |
tgaagcaaccgttaagtcctttgccttcccgagctaccttgccttccttc |
507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 251830 - 251902
Alignment:
| Q |
177 |
gccagcttctgttacatcggttatcgcgatctcgacgagaattttctccctagacatggccaatggtgtatac |
249 |
Q |
| |
|
|||| ||||||||| ||| | || ||||||| || ||| ||||||||| ||||||||||||| ||||||||| |
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|
| T |
251830 |
gccaacttctgttagatcaggtactgcgatctggatgaggattttctccttagacatggccaagggtgtatac |
251902 |
T |
|
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