View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_44 (Length: 299)

Name: NF16931_low_44
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_44
NF16931_low_44
[»] chr2 (1 HSPs)
chr2 (12-299)||(39631402-39631690)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 39631402 - 39631690
Alignment:
Q  12 atgaatgaattatgataccacgcaaatctttctgacttattcagaattaaaaagggagcaaaagatttccaaaaccttgacaatatatgcctttgaaact 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39631402 atgaatgaattatgataccactcaaatctttctgacttattcagaattaaaaagggagcaaaagatttccaaaaccttgacaatatatgcctttgaaact 39631501  T
Q  112 tgtttaactcataacttaaggtatgtacaactaatcttaatactataattgattaaa-tactgatggctgatcatcttttgtttattgattaaacgtacg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39631502 tgtttaactcataacttaaggtatgtacaactaatcttaatactataattgattaaattactgatggctgatcatcttttgtttattgattaaacgtacg 39631601  T
Q  211 tggcatcttaatctccccgaaatgttaaagctcattcaaacaaattgttannnnnnnnaatatttctagtggcataatattctgtgggc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  39631602 tggcatcttaatctccccgaaatgttaaagctcattcaaacaaattgttattttttttaatatttctagtggcataatattctgtgggc 39631690  T

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