View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_46 (Length: 283)

Name: NF16931_low_46
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_46
NF16931_low_46
[»] chr7 (1 HSPs)
chr7 (1-283)||(2360079-2360361)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2360361 - 2360079
Alignment:
Q  1 ttaaagtagtgtctgattttgataaatttctagatcgtgaacaaaatcgagttaaaccgttcaaatttgttcatatttggttaggacaatggatttcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2360361 ttaaagtagtgtctgattttgataaatttctagatcgtgaacaaaatcgagttaaaccgttcaaatttgttcatatttggttaggacaatggatttcaag 2360262  T
Q  101 attcctattcggtcatccgcatgtcgaacatggctacataaattaattttctatccaaaagtaaacaatttatttcacttaaaaatagagtttatagtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2360261 attcctattcggtcatccgcatgtcgaacatggctacataaattaattttctatccaaaagtaaacaatttatttcacttaaaaatagagtttatagtca 2360162  T
Q  201 agtttgtctctaaaattgtaactacttgtcatattaatccttgacttttattatttcagaatttcaacttacgttaatcaaat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2360161 agtttgtctctaaaattgtaactacttgtcatattaatccttgacttttattatttaagaatttcaacttacgttaatcaaat 2360079  T

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