View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_47 (Length: 280)
Name: NF16931_low_47
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_47 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 25812635 - 25812898
Alignment:
| Q |
1 |
caatcaattatttcagccactgtgaaacatctatcacaccttgctgccacgtttgataccttcatatgaatttgtgtgatggtaattactttgcaagaaa |
100 |
Q |
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| T |
25812635 |
caatcaattatttcagccactgtgaaacatctatcacaccttgcagccacgtttgataccttcatatgaatttgtgtgagggtaattactttgcaagaaa |
25812734 |
T |
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| Q |
101 |
aatccaatgacctcaaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaac |
200 |
Q |
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| T |
25812735 |
aatccaatgacctcaaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaattgaagaatcaattcttctgac |
25812834 |
T |
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| Q |
201 |
ttcatcatgagtcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatc |
264 |
Q |
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| T |
25812835 |
ttcatcatgagtcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatc |
25812898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 25799866 - 25800036
Alignment:
| Q |
47 |
ccacgtttgataccttcatatgaatttgtgtgatggtaattactttgc-aagaaaaatccaatgacctcaaaaggtccaacttgtcatgtact---ataa |
142 |
Q |
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| T |
25799866 |
ccacatttgataccttcat--gaatttgtg--atggtaaatgctttgctaagaaaaatgagatgacctcaaaaggaccaacttgtcatgtactactataa |
25799961 |
T |
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| Q |
143 |
atattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgagtcattg |
217 |
Q |
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| T |
25799962 |
atatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatgggtcattg |
25800036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 114804 - 114634
Alignment:
| Q |
47 |
ccacgtttgataccttcatatgaatttgtgtgatggtaattactttgc-aagaaaaatccaatgacctcaaaaggtccaacttgtcatgtacta---taa |
142 |
Q |
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|||| |||||||||||||| ||||||||| ||||||| | |||||| ||||||||| |||||||||||||| |||||||||||||||||| ||| |
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| T |
114804 |
ccacatttgataccttcat--gaatttgtg--atggtaaatgctttgctaagaaaaatgtgatgacctcaaaaggaccaacttgtcatgtactactataa |
114709 |
T |
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| Q |
143 |
atattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgagtcattg |
217 |
Q |
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| T |
114708 |
atatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatgggtcattg |
114634 |
T |
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