View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16931_low_51 (Length: 270)
Name: NF16931_low_51
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_51 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 565182 - 564925
Alignment:
| Q |
11 |
cataggtaaattttcttttaattgttggagtagtatcttctctatcaaagattacaataataagagaaagacaaagaggacaaaattcttgaaaagatca |
110 |
Q |
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| T |
565182 |
cataggtaaattttcttttaatagctggagtagtatcttctctatcaaagattacaataataagagaaagacaaagaggacaaaattcttgaaaagatca |
565083 |
T |
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| Q |
111 |
agagtgaatcatggatccaattaaggattcttaaatcgctcacaacaaaaattaatggtattgtatattatatactatcaaggagtgtaaattactcttg |
210 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
565082 |
agagtgaatcgtggatccaattaaggattcttaaatcgctcacaacaagaattaatggtattgtatattatatactatcatggagtgtaaattactcttg |
564983 |
T |
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| Q |
211 |
tttacactatcatatgtacaacatgacaactagccgtttgttttgttcttgtcttaatta |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
564982 |
tttacactatcatatgtacaacatgacaactagccgtttg--ttgttcttgtcttaatta |
564925 |
T |
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