View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16931_low_54 (Length: 252)
Name: NF16931_low_54
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16931_low_54 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 35365654 - 35365873
Alignment:
| Q |
34 |
ttcttcaagaaaatagttttggtggggaattgccacattttataggaaacttttcaacccatcttagttggcttgatatggggatgaatcaaatatatgg |
133 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35365654 |
ttcttcatgaaaatagatttggtggggaattgccacattttacaggaaacttttcaacccatcttagttggcttgatatggggatgaatcaaatatatgg |
35365753 |
T |
|
| Q |
134 |
aaccatacttaaaggaatcagacaacttatcggtttaacata-ttagacataggaaagaatttacttgagagaacaattccaaattcaattggaaagtta |
232 |
Q |
| |
|
| |||||| ||||||||| ||||||||| |||||||||||| |||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
35365754 |
agccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatttccttgagggaacaataccaaattcaattggaaagtta |
35365853 |
T |
|
| Q |
233 |
aataatctattaaaattgtt |
252 |
Q |
| |
|
||||||||| | |||||||| |
|
|
| T |
35365854 |
aataatctagtgaaattgtt |
35365873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 13564165 - 13564372
Alignment:
| Q |
43 |
aaaatagttttggtggggaattgccacattttataggaaacttttcaacccatcttagttggcttgatatggggatgaatcaaatatatggaaccatact |
142 |
Q |
| |
|
||||||| |||| ||| || ||| | ||| |||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
13564165 |
aaaatagatttgctggtgagttgtcgcatcttataggaaacttttctgttcatctcagtatgcttgatatggggcataatcaaatatatggagtgatacc |
13564264 |
T |
|
| Q |
143 |
taaaggaatcagacaacttatcggtttaacata-ttagacataggaaagaatttacttgagagaacaattccaaattcaattggaaagttaaataatcta |
241 |
Q |
| |
|
|||| ||| | ||||| ||||||||||| | ||| | || ||||| ||||| |||||| ||||||||||| |||||||||||| | | || |||||| |
|
|
| T |
13564265 |
aaaag-aataggtcaactaatcggtttaacttccttaaagattggaaacaatttccttgagggaacaattccagattcaattggaatgcttaagaatcta |
13564363 |
T |
|
| Q |
242 |
ttaaaattg |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
13564364 |
gtaaaattg |
13564372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 30634242 - 30634280
Alignment:
| Q |
191 |
aatttacttgagagaacaattccaaattcaattggaaag |
229 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
30634242 |
aatttacttgagggaacaattccagattcaattggaaag |
30634280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University