View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16931_low_6 (Length: 647)

Name: NF16931_low_6
Description: NF16931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16931_low_6
NF16931_low_6
[»] chr7 (30 HSPs)
chr7 (10-631)||(22036940-22037560)
chr7 (157-631)||(22021246-22021720)
chr7 (59-476)||(22039955-22040378)
chr7 (10-310)||(18326423-18326723)
chr7 (409-617)||(18326089-18326297)
chr7 (409-545)||(22028568-22028704)
chr7 (409-631)||(16839375-16839597)
chr7 (156-306)||(22011030-22011189)
chr7 (409-600)||(16846458-16846649)
chr7 (43-226)||(18322643-18322833)
chr7 (423-617)||(22019221-22019415)
chr7 (156-310)||(16839111-16839267)
chr7 (156-310)||(16846194-16846350)
chr7 (431-528)||(19344591-19344688)
chr7 (58-122)||(22023091-22023155)
chr7 (10-233)||(22028877-22029112)
chr7 (194-310)||(22019535-22019654)
chr7 (425-485)||(19722018-19722078)
chr7 (431-489)||(19357906-19357964)
chr7 (45-99)||(22024957-22025011)
chr7 (431-532)||(1985971-1986072)
chr7 (420-528)||(19779559-19779667)
chr7 (420-528)||(19887716-19887824)
chr7 (420-528)||(26256732-26256840)
chr7 (431-525)||(18514803-18514897)
chr7 (431-485)||(29454119-29454173)
chr7 (438-495)||(9807814-9807871)
chr7 (344-377)||(16839301-16839334)
chr7 (344-377)||(16846384-16846417)
chr7 (331-375)||(22028735-22028779)
[»] chr5 (5 HSPs)
chr5 (485-626)||(3234005-3234146)
chr5 (431-528)||(29647633-29647730)
chr5 (431-515)||(29597568-29597652)
chr5 (433-496)||(24330917-24330980)
chr5 (431-485)||(42298111-42298165)
[»] chr2 (6 HSPs)
chr2 (410-615)||(10205439-10205644)
chr2 (411-533)||(18913553-18913675)
chr2 (411-533)||(18920761-18920883)
chr2 (411-533)||(18908805-18908927)
chr2 (431-532)||(14514853-14514954)
chr2 (194-233)||(10205208-10205247)
[»] chr3 (3 HSPs)
chr3 (420-532)||(32578870-32578982)
chr3 (156-244)||(3866137-3866227)
chr3 (420-513)||(12734795-12734888)
[»] chr6 (6 HSPs)
chr6 (431-532)||(6947896-6947997)
chr6 (420-528)||(14749354-14749462)
chr6 (431-539)||(20770596-20770704)
chr6 (431-528)||(6954535-6954632)
chr6 (431-532)||(24254442-24254543)
chr6 (431-495)||(6921366-6921430)
[»] chr4 (2 HSPs)
chr4 (431-534)||(53774791-53774894)
chr4 (431-533)||(3565696-3565798)
[»] scaffold0464 (1 HSPs)
scaffold0464 (420-513)||(8033-8126)
[»] chr1 (1 HSPs)
chr1 (433-496)||(21855401-21855464)
[»] scaffold0128 (1 HSPs)
scaffold0128 (431-497)||(4125-4191)


Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 10 - 631
Target Start/End: Complemental strand, 22037560 - 22036940
Alignment:
Q  10 aagaatattcaagtgagaaggaatttctcttgtgtgaattaccttaaatataaaagcaaaagaaattcattcaatggcgagattgtcaaactgtttccat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  22037560 aagaatattcaagtgagaaggaatttctcttgtgtgaattaccttaaatataaaagcaaaagaaattcattcaatggagagat-gtcaaactgtttccat 22037462  T
Q  110 tagccaaaataattaaataaaagccatcatataaattaatcccagaacaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgac 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22037461 tagccaaaataattaaataaaagccattatataaattaatcccagaacaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgac 22037362  T
Q  210 agaaaaccaagctttcaacataatcattgatatagatccacgagctttccccattggtaattctaattttctctatgctaccatctctcaaattatagac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22037361 agaaaaccaagctttcaacataatcattgatatagatccacgagctttccccattggtaattctagttttctctatgctaccatctctcaaattatagac 22037262  T
Q  310 agcaaattcatgttcaagagtgcttcccagtatcagtgtatcataatttttagaaaggtgcaatggcacccatgccgaccactcatcaannnnnnncaga 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  22037261 agcaaattcatgttcaagagtgcttcccagtatcagtgtatcataatttttagaaaggtgcaatggcacccatgccgaccactcatcaatttttttcaga 22037162  T
Q  410 atttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaa 509  Q
    |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22037161 atttgaagattaatctcgagtaattgagtccaagaatcatcatctccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaa 22037062  T
Q  510 aacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgaggtagaagcaactctttgcatgtctctgtacgcag 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22037061 aacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgagggagaagcaactctttgcatgtctctgtacgcag 22036962  T
Q  610 atcaagtgcaacaatcataaat 631  Q
    ||||||||||||||||||||||    
T  22036961 atcaagtgcaacaatcataaat 22036940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 157 - 631
Target Start/End: Complemental strand, 22021720 - 22021246
Alignment:
Q  157 caagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgagctt 256  Q
    |||||||||||||||| | |||||||||  |||||| ||||||||||||||||| |||||||||||||||||||| |  ||||||||||||||||||| |    
T  22021720 caagaattaacagaaaataaaataaattgaaagaggaacttactttcaatgacacaaaaccaagctttcaacatatttcttgatatagatccacgagcat 22021621  T
Q  257 tccccattggtaattctaattttctctatgctaccatctctcaaattatagacagcaaattcatgttcaagagtgcttcccagtatcagtgtatcataat 356  Q
    || |||||||||||| || ||||||| |  |||||||||||||||||||| ||| |   | |||  ||||   || || ||| |||||||||||||||||    
T  22021620 tcaccattggtaattatagttttctcaacactaccatctctcaaattatatacaactgttacatcatcaaccttgttttccaatatcagtgtatcataat 22021521  T
Q  357 ttttagaaaggtgcaatggcacccatgccgaccactcatcaannnnnnncagaatttgaagattaatcttgagtaattgagtccaagaatcttcaactcc 456  Q
    ||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||| || || ||||||||||||||||| |||||||||||    
T  22021520 ttttagagaggtgcaatggcacccatgccgaccactcatcaattggtttcagaatttgaagattgattttaagtaattgagtccaagattcttcaactcc 22021421  T
Q  457 ataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaacacacatagagatggctcataacatggg 556  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  22021420 ataatccatcatctgccatataaccaaatgggttttcttcacaagatgagaaaaacaaatgcaatccatcaacacacatagagatggctcaaaacttggg 22021321  T
Q  557 acttcgtcaaaacctcgaggtagaagcaactctttgcatgtctctgtacgcagatcaagtgcaacaatcataaat 631  Q
    ||||| ||||||||||| || ||||||||||||||||||||||| ||||  |||||||||| ||||||| |||||    
T  22021320 acttcatcaaaacctcgcgggagaagcaactctttgcatgtctccgtaccaagatcaagtgaaacaatcttaaat 22021246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 59 - 476
Target Start/End: Complemental strand, 22040378 - 22039955
Alignment:
Q  59 ataaaagcaaaagaaattcat---tcaatggcgagattgtcaaactgtttccattagccaaaataattaaataaaagccatcatataaattaatcccaga 155  Q
    ||||| |||||||||||||||   ||||||| ||||||||||||||| | ||| | |||||| |||| ||||||||||||||||||||| |||||   ||    
T  22040378 ataaaggcaaaagaaattcatgattcaatggagagattgtcaaactggtaccaattgccaaa-taatcaaataaaagccatcatataaaataatcattga 22040280  T
Q  156 acaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgagct 255  Q
    ||||||| ||||||||||| |||||||||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||     
T  22040279 acaagaactaacagaaattaaaataaatttaaagcggcacttactttcaatgacacaaaaccaagctttcaacatagtcattgatatagatccttgagca 22040180  T
Q  256 ttccccattggtaattctaattttctctatgctaccatctctcaaattatagacagcaaattcatgttcaagagtgcttcccagtatcagtgtatcataa 355  Q
    |||  ||||||||||||||||| |||||| ||||||||||||||||||||||| | |   |   | |||| || || || ||| || |||||||||| ||    
T  22040179 ttcagcattggtaattctaattctctctacgctaccatctctcaaattatagaaaactggtatgtattcaggattggtttccaataacagtgtatcaaaa 22040080  T
Q  356 tttttagaaaggtgcaatggcacccatgccgaccactc----atcaannnnnnncagaatttgaagattaatcttgagtaattgagtccaagaatcttca 451  Q
    |||||||||||||||||||| ||||||| |   | |||    |  ||       || |||||||| ||||||||| ||||||||||||||||| ||||||    
T  22040079 tttttagaaaggtgcaatggaacccatggcaggccctcaaaaagtaaattttttcataatttgaaaattaatcttaagtaattgagtccaagactcttca 22039980  T
Q  452 actccataatccatcatcttccata 476  Q
    |||||||||||  ||||||||||||    
T  22039979 actccataatctgtcatcttccata 22039955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 18326723 - 18326423
Alignment:
Q  10 aagaatattcaagtgagaaggaatttc-tcttgtgtgaattaccttaaatataaaagcaaaagaaattcattcaatggcgagattgtcaaactgtttcca 108  Q
    ||||||||||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||    
T  18326723 aagaatattcaagagagaaggaatttcattttgggtgaattacct-aaatataaaagcaaaagaaattcattcaatggagagattgtcaaaccgttacca 18326625  T
Q  109 ttagccaaaataattaaataaaagccatcatataaattaatcccagaacaagaattaacagaaattcaaataaat--ttgaagagggacttactttcaat 206  Q
     ||||||||||||| |||||||||| |||| ||||| ||||| || || |      |||||||||||||||||||  | ||||||| |||||||||||      
T  18326624 atagccaaaataatcaaataaaagctatcaaataaaataatcacacaata-----caacagaaattcaaataaatcctcgaagaggaacttactttcatc 18326530  T
Q  207 gacagaaaaccaagctttcaacataatca---ttgatatagatccacgagctttccccattggtaattctaattttctctatgctaccatctctcaaatt 303  Q
    |||| | ||||||||||||| |||||| |   ||| |||||  |||  | | ||  |||||| ||||||||||| ||||||  ||| |||||||||||||    
T  18326529 gacacagaaccaagctttcagcataataattcttgttatagcgccagcaacgtttaccattgataattctaattctctctacactatcatctctcaaatt 18326430  T
Q  304 atagaca 310  Q
    |||||||    
T  18326429 atagaca 18326423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 409 - 617
Target Start/End: Complemental strand, 18326297 - 18326089
Alignment:
Q  409 aatttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaa 508  Q
    |||||||||||| ||||| ||||||||| ||||||| ||||||||||| ||||   |||| | ||||||||| ||||| | ||||||||||| |||||||    
T  18326297 aatttgaagatttatcttaagtaattgactccaagactcttcaactccgtaatgtgtcatttgccatataactaaatgagctttcttgacaacatgagaa 18326198  T
Q  509 aaacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgaggtagaagcaactctttgcatgtctctgtacgca 608  Q
    ||||||| |||||||| |||| ||||||||||||||| |  |  ||| |||||  |||||||||||||  ||||||| |||||||||||||| || | ||    
T  18326197 aaacaaaggcaatccagcaactcacatagagatggcttaacatgtggtacttctgcaaaacctcgaggcggaagcaaatctttgcatgtctccgtgccca 18326098  T
Q  609 gatcaagtg 617  Q
     ||||||||    
T  18326097 aatcaagtg 18326089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 409 - 545
Target Start/End: Complemental strand, 22028704 - 22028568
Alignment:
Q  409 aatttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaa 508  Q
    |||||||| | ||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||| |||||| |  | ||||    
T  22028704 aatttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaa 22028605  T
Q  509 aaacaaatgcaatccatcaacacacatagagatggct 545  Q
    ||||||| |||||||||||||||| |||| |||||||    
T  22028604 aaacaaaggcaatccatcaacacaaatagtgatggct 22028568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 409 - 631
Target Start/End: Original strand, 16839375 - 16839597
Alignment:
Q  409 aatttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaa 508  Q
    |||||||||||  ||| |  |||||||||||||||| |||| ||||||||||||  |||||||||||||||| | ||| |||||||| |||| |||||||    
T  16839375 aatttgaagatctatcctacgtaattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagttttcttaacaacatgagaa 16839474  T
Q  509 aaacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgaggtagaagcaactctttgcatgtctctgtacgca 608  Q
    ||||||| ||| |||||||||| ||| | |||||||| |  | |||| |||||  |||||||||||||  ||||||| | |||| ||||||| || | ||    
T  16839475 aaacaaaggcagtccatcaacagacaaatagatggcttaataaatggcacttcaacaaaacctcgagggggaagcaaatatttgtatgtctccgtgccca 16839574  T
Q  609 gatcaagtgcaacaatcataaat 631  Q
     |||||||| || ||||| ||||    
T  16839575 aatcaagtgaaataatcacaaat 16839597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 156 - 306
Target Start/End: Complemental strand, 22011189 - 22011030
Alignment:
Q  156 acaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagat------cca 249  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||  |||||||||||      |||    
T  22011189 acaagaattaacagaaattaaaataaatttaaagaggaacttactttcaatgacacaaaactaagctttcaacataattcttgatatagatccccgacca 22011090  T
Q  250 cgagcttt---ccccattggtaattctaattttctctatgctaccatctctcaaattata 306  Q
    ||||| ||   | ||||||||||||||| |||||||||  ||||||||||||| ||||||    
T  22011089 cgagcatttaccaccattggtaattctagttttctctacactaccatctctcagattata 22011030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 409 - 600
Target Start/End: Original strand, 16846458 - 16846649
Alignment:
Q  409 aatttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaa 508  Q
    |||||||||||  ||| |  |||||||||||||||| |||| ||||||||||||  |||||||||||||||| | ||| |||| |||||||| |||||||    
T  16846458 aatttgaagatctatcctacgtaattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagtttgcttgacaacatgagaa 16846557  T
Q  509 aaacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgaggtagaagcaactctttgcatgtctc 600  Q
    ||||||| ||| |||||||||| ||| | |||||||| |  | |||| |||||  |||||||||||||  ||||||| | |||| |||||||    
T  16846558 aaacaaaggcagtccatcaacagacaaatagatggcttaataaatggcacttcaacaaaacctcgagggggaagcaaatatttgtatgtctc 16846649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 43 - 226
Target Start/End: Complemental strand, 18322833 - 18322643
Alignment:
Q  43 gtgaattaccttaaatataaaagcaa-aagaaattcattcaatggcgagattgtcaaactgtttccattagccaaaataattaaataaaagccatcatat 141  Q
    |||||||||||| ||||||||||||| |||||| |||||  || | || |||||||||| |||  || ||||||||||||| |||||||| |||||||||    
T  18322833 gtgaattaccttgaatataaaagcaataagaaaatcatttgattgagaaattgtcaaacagttaacaatagccaaaataataaaataaaatccatcatat 18322734  T
Q  142 aaattaatcccagaac----aagaattaacagaaattcaaataaat--ttgaagagggacttactttcaatgacagaaaaccaagctttca 226  Q
    ||  |||||  | |||    |||||||||||||||||||| || ||  | ||||||| ||||||||||||||||| |||||||||||||||    
T  18322733 aacataatcaaacaacatataagaattaacagaaattcaagtatatcatcgaagaggaacttactttcaatgacacaaaaccaagctttca 18322643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 617
Target Start/End: Complemental strand, 22019415 - 22019221
Alignment:
Q  423 tcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatc 522  Q
    |||| |||||| ||||||||||||| ||||||| ||||||| || |||||| |||||| |||||  ||| ||| ||||||||| ||||||||| ||||||    
T  22019415 tcttaagtaatggagtccaagaatcatcaactcaataatccgtcttcttccttataacaaaatgactttccttaacaagatgataaaaacaaaggcaatc 22019316  T
Q  523 catcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgaggtagaagcaactctttgcatgtctctgtacgcagatcaagtg 617  Q
    || ||  |||||||| |||||||    |  ||| ||||  ||||| ||||||||  ||| |||||||||| |||||||||| | |||||||||||    
T  22019315 caccagtacacatagtgatggcttggcaagtggcacttgatcaaatcctcgaggcggaatcaactctttgtatgtctctgtccccagatcaagtg 22019221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 156 - 310
Target Start/End: Original strand, 16839111 - 16839267
Alignment:
Q  156 acaagaattaacagaaattcaaataaat--ttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgag 253  Q
    |||||||||||| |||||||||||||||  | ||||||| ||||||||||| | ||| |||||||||||||||  ||| |  |||||||||  |||| ||    
T  16839111 acaagaattaacggaaattcaaataaatcgtggaagaggaacttactttcattcacataaaaccaagctttcagaatagttcttgatatagtgccaccag 16839210  T
Q  254 ctttccccattggtaattctaattttctctatgctaccatctctcaaattatagaca 310  Q
    | ||| |||||| |||||||| || ||| ||  |||  |||| ||||||||||||||    
T  16839211 cgttcaccattgataattctagttctctttacactatgatctatcaaattatagaca 16839267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 310
Target Start/End: Original strand, 16846194 - 16846350
Alignment:
Q  156 acaagaattaacagaaattcaaataaatt--tgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgag 253  Q
    |||||||||||| | |||||||| ||||   |||||||| ||||||||||||||| | |||||||||||||||  ||| |  |||||||||  |||| ||    
T  16846194 acaagaattaacggcaattcaaagaaatcaatgaagaggaacttactttcaatgaaacaaaaccaagctttcagaatagttcttgatatagtgccaccag 16846293  T
Q  254 ctttccccattggtaattctaattttctctatgctaccatctctcaaattatagaca 310  Q
    | ||| |||||| |||||||| || ||| ||  |||  |||| ||||||||||||||    
T  16846294 cgttcaccattgataattctagttctctttacactatgatctatcaaattatagaca 16846350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 19344591 - 19344688
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaa 528  Q
    |||||||||||||| | |||||||||| | |||||||||| ||||||||| ||||| || ||||||| |   ||||||||||||| ||| ||||||||    
T  19344591 aattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattgtgagaaaaacaaaggcagtccatcaa 19344688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 22023155 - 22023091
Alignment:
Q  58 tataaaagcaaaagaaattcattcaatggcgagattgtcaaactgtttccattagccaaaataat 122  Q
    ||||||||||||||||||||||||||||   |||||||||||| ||| ||| |||||||||||||    
T  22023155 tataaaagcaaaagaaattcattcaatgcaaagattgtcaaaccgttaccaatagccaaaataat 22023091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 22029112 - 22028877
Alignment:
Q  10 aagaatattcaagtgagaaggaatttctcttgtgtgaattaccttaaatataaaagcaaaagaaattcattcaatggcgagattgtcaaactgtttccat 109  Q
    ||||||||||||| |||||||||||||| ||| |||| |||| |  ||| |  |||||||| |||||||||  |||| ||||||||||||| ||| | |     
T  22029112 aagaatattcaagagagaaggaatttcttttgggtgacttacat--aatgtggaagcaaaataaattcatttgatggagagattgtcaaaccgttactaa 22029015  T
Q  110 t----agccaaaata----attaaataaaagccatcatataaattaatcccagaaca----agaattaacagaaattcaaataaatttg--aagagggac 195  Q
    |    ||||||||||    || |||||||||||| |||| ||| || || || ||||    ||||| |||||||||||||||||||     |||||| ||    
T  22029014 ttaacagccaaaatatataatcaaataaaagccaccatagaaaatagtcacacaacatggaagaataaacagaaattcaaataaatcgacaaagaggaac 22028915  T
Q  196 ttactttcaatgacagaaaaccaagctttcaacataat 233  Q
    ||||||||||||||| ||||| | ||||||||||||||    
T  22028914 ttactttcaatgacacaaaactaggctttcaacataat 22028877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 22019654 - 22019535
Alignment:
Q  194 acttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgagctttccccattggtaattctaattttctcta---tgctac 290  Q
    |||||||||| |||||| ||||| ||||||||||||||||  |||||||||| ||   ||| ||  || ||||||||||||||| ||||||   | ||||    
T  22019654 acttactttctatgacacaaaactaagctttcaacataattcttgatatagagcctatagcattagccgttggtaattctaattctctctacattactac 22019555  T
Q  291 catctctcaaattatagaca 310  Q
    ||||| ||||||||| ||||    
T  22019554 catctttcaaattattgaca 22019535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 485
Target Start/End: Complemental strand, 19722078 - 19722018
Alignment:
Q  425 ttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaat 485  Q
    ||||| ||||||||||||||||||| ||||||| | |||||||||||||||| ||| ||||    
T  19722078 ttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 19357964 - 19357906
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggt 489  Q
    |||||||||||||| |||| ||||||| | |||||||||||||||| ||| ||||||||    
T  19357964 aattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 22025011 - 22024957
Alignment:
Q  45 gaattaccttaaatataaaagcaaaagaaattcattcaatggcgagattgtcaaa 99  Q
    ||||||||||| || ||||||||||||||||||||||||||  ||||||| ||||    
T  22025011 gaattaccttatatgtaaaagcaaaagaaattcattcaatgcagagattggcaaa 22024957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 532
Target Start/End: Original strand, 1985971 - 1986072
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaaca 530  Q
    |||||||||||||| |||||||| ||| | ||| |||| | ||| | ||| |||||||||||||||| |  || ||||||| | | ||||||||||||||    
T  1985971 aattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttcttgaaatcataagaaaaatagaggcaatccatcaaca 1986070  T
Q  531 ca 532  Q
    ||    
T  1986071 ca 1986072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 19779667 - 19779559
Alignment:
Q  420 taatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgca 519  Q
    |||| ||||| |||||||||||||| |||| |||||| || |||||||||  ||||| ||| |||||||| | ||||  | | ||||||||||| |  ||    
T  19779667 taattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagaca 19779568  T
Q  520 atccatcaa 528  Q
    |||||||||    
T  19779567 atccatcaa 19779559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 19887716 - 19887824
Alignment:
Q  420 taatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgca 519  Q
    |||| ||||| |||||||||||||| |||| |||||| || |||||||||  ||||| ||| |||||||| | ||||  | | ||||||||||| |  ||    
T  19887716 taattttgaggaattgagtccaagagtcttgaactccgtactccatcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagaca 19887815  T
Q  520 atccatcaa 528  Q
    |||||||||    
T  19887816 atccatcaa 19887824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 26256840 - 26256732
Alignment:
Q  420 taatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgca 519  Q
    ||||||| | ||||||||||||||| |||| ||||||||| ||| |||||| ||||| ||| ||||   ||| ||||  |  |||||||||||||| |||    
T  26256840 taatcttaaataattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggca 26256741  T
Q  520 atccatcaa 528  Q
     ||||||||    
T  26256740 ttccatcaa 26256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 18514803 - 18514897
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccat 525  Q
    |||||||||||||| | |||||||||| | ||   ||| ||||||||||  |||||| ||||||||| |  || ||||||||| |||||||||||    
T  18514803 aattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacatgcaatccat 18514897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 29454119 - 29454173
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaat 485  Q
    ||||||||||||||||||||||||||| | | |||||||  ||||||||| ||||    
T  29454119 aattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 495
Target Start/End: Complemental strand, 9807871 - 9807814
Alignment:
Q  438 tccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttctt 495  Q
    ||||||| |||||||||||| | ||| |||||| ||||||||| |||| |||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttctt 9807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 16839301 - 16839334
Alignment:
Q  344 agtgtatcataatttttagaaaggtgcaatggca 377  Q
    |||| |||||||||||||||||||||||||||||    
T  16839301 agtgcatcataatttttagaaaggtgcaatggca 16839334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 16846384 - 16846417
Alignment:
Q  344 agtgtatcataatttttagaaaggtgcaatggca 377  Q
    |||| |||||||||||||||||||||||||||||    
T  16846384 agtgcatcataatttttagaaaggtgcaatggca 16846417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 22028779 - 22028735
Alignment:
Q  331 gcttcccagtatcagtgtatcataatttttagaaaggtgcaatgg 375  Q
    |||| ||| |||||||||||| | |||||||||||||||||||||    
T  22028779 gctttccaatatcagtgtatcgtgatttttagaaaggtgcaatgg 22028735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 485 - 626
Target Start/End: Original strand, 3234005 - 3234146
Alignment:
Q  485 tgggttttcttgacaagatgagaaaaacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgaggtagaagca 584  Q
    ||||||||||||||||  || ||||| || | |||||||||||| |||||||||||||||||| ||||||| ||||  ||||||||| |||| |||||||    
T  3234005 tgggttttcttgacaacgtgggaaaagcagaggcaatccatcaaaacacatagagatggctcaaaacatggcacttgatcaaaaccttgaggaagaagca 3234104  T
Q  585 actctttgcatgtctctgtacgcagatcaagtgcaacaatca 626  Q
    |||||||| |||||| | ||| ||||| ||||| || |||||    
T  3234105 actctttgtatgtctgtttactcagataaagtgaaataatca 3234146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 528
Target Start/End: Complemental strand, 29647730 - 29647633
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaa 528  Q
    |||||||||||||| | ||||| |||| | || ||||| | ||||||||| ||||| |||||||| | | | ||||||||||||| ||||||||||||    
T  29647730 aattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaaggcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 515
Target Start/End: Original strand, 29597568 - 29597652
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaa 515  Q
    |||||||||||||| | |||||||||| | || ||||| | ||||||||| ||||| |||| ||||| | | |||||||||||||    
T  29597568 aattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaatggtgagaaaaacaaa 29597652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 24330917 - 24330980
Alignment:
Q  433 ttgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttg 496  Q
    ||||||||||||||||||||| ||| | ||| |||||| ||||||||| |||| ||||| ||||    
T  24330917 ttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttg 24330980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 42298165 - 42298111
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaat 485  Q
    |||||||||||||||| |||| ||||| | || ||||||||||||||||| ||||    
T  42298165 aattgagtccaagaattttcatctccaaattctatcatcttccatataactaaat 42298111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 410 - 615
Target Start/End: Original strand, 10205439 - 10205644
Alignment:
Q  410 atttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaa 509  Q
    ||||||||||||||||| | || |||||||||||| |||||||| ||||| ||  |||||||||||||||| ||||| |||||||| |||| || | |||    
T  10205439 atttgaagattaatcttaactagttgagtccaagactcttcaacaccatactcagtcatcttccatataacaaaatgagttttcttaacaacattaaaaa 10205538  T
Q  510 aacaaatgcaatccatcaacacacatagagatggctcataacatgggacttcgtcaaaacctcgaggtagaagcaactctttgcatgtctctgtacgcag 609  Q
    |||||| | |||||||||| |||| ||||| ||||| |    |||| ||||| ||||||||| ||||  || | ||||| ||| |||| || ||| ||||    
T  10205539 aacaaaggaaatccatcaagacacctagagttggcttaatcaatggaacttcatcaaaaccttgagggggacgtaactccttgtatgtttccgtatgcag 10205638  T
Q  610 atcaag 615  Q
    ||||||    
T  10205639 atcaag 10205644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 411 - 533
Target Start/End: Original strand, 18913553 - 18913675
Alignment:
Q  411 tttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaa 510  Q
    |||||| | |||| ||||| |||||||||||||| |||| ||||||| | |||||||||||||||||||| |||||||||  | ||| | | ||||||||    
T  18913553 tttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttcccctgaaacggtgagaaaa 18913652  T
Q  511 acaaatgcaatccatcaacacac 533  Q
    ||| |  ||||||||||||||||    
T  18913653 acatagacaatccatcaacacac 18913675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 411 - 533
Target Start/End: Original strand, 18920761 - 18920883
Alignment:
Q  411 tttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaa 510  Q
    |||||| | |||| ||||| |||||||||||||| |||| ||||||| | |||||||||||||||||||| ||||||||||   | | | | ||||||||    
T  18920761 tttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttctctaaaacggtgagaaaa 18920860  T
Q  511 acaaatgcaatccatcaacacac 533  Q
    ||| || ||||||||||||||||    
T  18920861 acatatacaatccatcaacacac 18920883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 411 - 533
Target Start/End: Original strand, 18908805 - 18908927
Alignment:
Q  411 tttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaa 510  Q
    |||||| | |||| ||||| |||||||||||||| |||| ||||||| | |||||||||||||||||||| ||||||||||   | | | | ||||||||    
T  18908805 tttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttctctaaaacggtgagaaaa 18908904  T
Q  511 acaaatgcaatccatcaacacac 533  Q
    ||| |  ||||||||||||||||    
T  18908905 acatagacaatccatcaacacac 18908927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 532
Target Start/End: Complemental strand, 14514954 - 14514853
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccat-catcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaac 529  Q
    ||||||||||||||||||||||||||| ||| ||| ||| ||||||||||| | |||||||||||||| |  || ||||||||| ||||| ||| | |||    
T  14514954 aattgagtccaagaatcttcaactcca-aattcatccattttccatataacaagatgggttttcttgaaatcataagaaaaacacatgcagtcccttaac 14514856  T
Q  530 aca 532  Q
    |||    
T  14514855 aca 14514853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 10205208 - 10205247
Alignment:
Q  194 acttactttcaatgacagaaaaccaagctttcaacataat 233  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  10205208 acttactttcaatgacccaaaaccaagctttcaacataat 10205247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 420 - 532
Target Start/End: Original strand, 32578870 - 32578982
Alignment:
Q  420 taatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgca 519  Q
    |||||||||| |||||||||||||| || | |||||| || ||||||||| |||||| ||| |||||||| | ||||| | | ||||||||||| |  ||    
T  32578870 taatcttgaggaattgagtccaagactcgtgaactccgtactccatcatcatccataaaacaaaatgggtctccttgaaacggtgagaaaaacatagaca 32578969  T
Q  520 atccatcaacaca 532  Q
    |||||||||||||    
T  32578970 atccatcaacaca 32578982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 3866227 - 3866137
Alignment:
Q  156 acaagaattaacagaaattcaaataaat--ttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatag 244  Q
    ||||||||||||  ||||||||||||||  | ||||||| ||||||||||||||||| | |||||||||||||  ||| | ||||||||||    
T  3866227 acaagaattaacgaaaattcaaataaatcgtcgaagaggaacttactttcaatgacacagaaccaagctttcagaatagttattgatatag 3866137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 513
Target Start/End: Original strand, 12734795 - 12734888
Alignment:
Q  420 taatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaaca 513  Q
    |||| ||||| |||||| |||||||||||| ||||||  | |||| |||| |||||| ||| |||||||||  ||||| | | |||||||||||    
T  12734795 taattttgagaaattgaatccaagaatcttgaactccgaattccaacatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaaca 12734888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 532
Target Start/End: Original strand, 6947896 - 6947997
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaaca 530  Q
    |||||||||||||| |||||||||||| | ||| |||| | ||| | ||| || ||||||||||||| |  ||| |||||||||| ||||||||||||||    
T  6947896 aattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaaaggcaatccatcaaca 6947995  T
Q  531 ca 532  Q
    ||    
T  6947996 ca 6947997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 14749462 - 14749354
Alignment:
Q  420 taatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgca 519  Q
    |||| ||||| |||||||||||||| |||| ||||||| | ||||||||| |||||| ||| |||||||| |  |||| | | ||||||||||| |  ||    
T  14749462 taattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggtctctttgaaacggtgagaaaaacatagaca 14749363  T
Q  520 atccatcaa 528  Q
    |||||||||    
T  14749362 atccatcaa 14749354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 539
Target Start/End: Complemental strand, 20770704 - 20770596
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaaca 530  Q
    |||||| |||| || ||||||| |||| | ||| |||| | ||||||||| ||||  ||||| || |||  ||||||||||||||| |||||||||||||    
T  20770704 aattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaaatacaatccatcaaca 20770605  T
Q  531 cacatagag 539  Q
    |||| ||||    
T  20770604 cacaaagag 20770596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 6954535 - 6954632
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaa 528  Q
    |||||||||||||| |||||||||||| | ||| |||| | ||| ||||| ||||||||||| |||| |  || ||| ||||| | ||||||||||||    
T  6954535 aattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaa 6954632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 532
Target Start/End: Original strand, 24254442 - 24254543
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaaca 530  Q
    |||||||||||||| | ||| |||||| | |||  ||||| ||||||||| ||||| ||| |||||| |   ||||||||||||| ||| ||||||||||    
T  24254442 aattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctcttgatatagtgagaaaaacaaaggcagtccatcaaca 24254541  T
Q  531 ca 532  Q
    ||    
T  24254542 ca 24254543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 6921366 - 6921430
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttctt 495  Q
    |||||||||||||| |||||||||||| | ||| |||| | ||| ||||| ||||||||||||||    
T  6921366 aattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttttctt 6921430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 534
Target Start/End: Complemental strand, 53774894 - 53774791
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaaca 530  Q
    |||||||||||||| |||||||||||| | ||| |||| | ||||||||| ||||| ||||  || | |  || |||||||||||| ||||||||||||     
T  53774894 aattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaacaaatacaatccatcaacg 53774795  T
Q  531 caca 534  Q
    ||||    
T  53774794 caca 53774791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 533
Target Start/End: Complemental strand, 3565798 - 3565696
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaacaaatgcaatccatcaaca 530  Q
    |||||||||||||| |||||||| ||| | ||| |||||| ||||||||  |||| |||||||||   |  || ||||||||||| ||| ||| ||||||    
T  3565798 aattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaaaggcagtccctcaaca 3565699  T
Q  531 cac 533  Q
    |||    
T  3565698 cac 3565696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 420 - 513
Target Start/End: Complemental strand, 8126 - 8033
Alignment:
Q  420 taatcttgagtaattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttgacaagatgagaaaaaca 513  Q
    |||| ||||| |||||| |||||||||||| ||||||  | ||||||||| |||||| ||| |||||||||  ||||| | | |||||||||||    
T  8126 taattttgagaaattgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaaca 8033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 21855401 - 21855464
Alignment:
Q  433 ttgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttg 496  Q
    ||||||||||||||||||||| ||| | ||| |||||| ||||||||| |||| ||||| ||||    
T  21855401 ttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtttccttg 21855464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 4191 - 4125
Alignment:
Q  431 aattgagtccaagaatcttcaactccataatccatcatcttccatataaccaaatgggttttcttga 497  Q
    |||||||||||||||| ||||  |||| | ||  ||||||||||||||||||||| ||| |||||||    
T  4191 aattgagtccaagaattttcatttccaaattctgtcatcttccatataaccaaatcggtcttcttga 4125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University